ENSLACG00000003269 (Latimeria chalumnae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLACG00000003269 T034794_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.889 0.981
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.889 0.981
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.889 0.981
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.889 0.981
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.889 0.981
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.889 0.981
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.889 0.981
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.889 0.981
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.889 0.981
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.889 0.981
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.889 0.981
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.889 0.981
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.889 0.981
Usf2
M01752_2.00 		Mus musculus
NNCACGTGAN
NTCACGTGNN		 PBM
Weirauch et al.(2014)
pTH5265 		0.846 0.963
Usf2
M08777_2.00 		Mus musculus
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A 		0.846 0.963
Usf2
M09479_2.00 		Mus musculus
NNCAYGTGVY
RBCACRTGNN		 Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030 		0.846 0.963
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000003670 bHLH 197 252

Links

Other bHLH family TFs
Other Latimeria chalumnae TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLONG_017316 Oryza longistaminata OLONG_017316 N
ORUFI12G10940 Oryza rufipogon ORUFI12G10940 N
ORUFI12G10910 Oryza rufipogon ORUFI12G10910 N
ORUFI12G10750 Oryza rufipogon ORUFI12G10750 N
ORGLA12G0092700 Oryza glaberrima ORGLA12G0092700 N
ORGLA12G0092600 Oryza glaberrima ORGLA12G0092600 N
OPUNC12G08870 Oryza punctata OPUNC12G08870 N
OPUNC12G08740 Oryza punctata OPUNC12G08740 N
OPUNC01G25690 Oryza punctata OPUNC01G25690 N
ONIVA12G09980 Oryza nivara ONIVA12G09980 N
ONIVA08G15060 Oryza nivara ONIVA08G15060 N
ONIVA01G27180 Oryza nivara ONIVA01G27180 N
OMERI12G11070 Oryza meridionalis OMERI12G11070 N
BGIOSGA037293 Oryza indica BGIOSGA037293 N
OLONG_012845 Oryza longistaminata OLONG_012845 N
OGLUM12G11100 Oryza glumaepatula OGLUM12G11100 N
OGLUM12G11050 Oryza glumaepatula OGLUM12G11050 N
OGLUM12G10910 Oryza glumaepatula OGLUM12G10910 N
OBART12G09870 Oryza barthii OBART12G09870 N
OBART12G09840 Oryza barthii OBART12G09840 N
OBART12G09720 Oryza barthii OBART12G09720 N
OB12G18970 Oryza brachyantha OB12G18970 N
OB0325G10010 Oryza brachyantha OB0325G10010 N
OB0134G10010 Oryza brachyantha OB0134G10010 N
LPERR12G08400 Leersia perrieri LPERR12G08400 N
BGIOSGA037294 Oryza indica BGIOSGA037294 N