USF1 (Monodelphis domestica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSMODG00000005443 T035483_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 0.981
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 0.981
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 0.981
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 0.981
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 0.981
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 0.981
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 0.981
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 0.981
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 0.981
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 0.981
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 0.981
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 0.981
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 0.981
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 0.981
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 0.981
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000006725 bHLH 200 255
ENSMODP00000029186 bHLH 204 259

Links

Other bHLH family TFs
Other Monodelphis domestica TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PILCRDRAFT_821899 Piloderma croceum PILCRDRAFT_821899 N
M404DRAFT_853889 Pisolithus tinctorius M404DRAFT_853889 N
M413DRAFT_170047 Hebeloma cylindrosporum M413DRAFT_170047 N
Moror_5897 Moniliophthora roreri Moror_5897 N
Moror_6337 Moniliophthora roreri Moror_6337 N
MPER_15625 Moniliophthora perniciosa MPER_15625 N
PAXRUDRAFT_316341 Paxillus rubicundulus PAXRUDRAFT_316341 N
PHACADRAFT_146309 Phanerochaete carnosa PHACADRAFT_146309 N
PHACADRAFT_262581 Phanerochaete carnosa PHACADRAFT_262581 N
PHLGIDRAFT_127046 Phlebiopsis gigantea PHLGIDRAFT_127046 N
PHLGIDRAFT_80941 Phlebiopsis gigantea PHLGIDRAFT_80941 N
PILCRDRAFT_672544 Piloderma croceum PILCRDRAFT_672544 N
M404DRAFT_141478 Pisolithus tinctorius M404DRAFT_141478 N
PISMIDRAFT_674680 Pisolithus microcarpus PISMIDRAFT_674680 N
PISMIDRAFT_679206 Pisolithus microcarpus PISMIDRAFT_679206 N
PLEOSDRAFT_1104780 Pleurotus ostreatus PLEOSDRAFT_1104780 N
SCHCODRAFT_236631 Schizophyllum commune SCHCODRAFT_236631 N
SCHCODRAFT_81806 Schizophyllum commune SCHCODRAFT_81806 N
SCLCIDRAFT_1212689 Scleroderma citrinum SCLCIDRAFT_1212689 N
SCLCIDRAFT_1222770 Scleroderma citrinum SCLCIDRAFT_1222770 N
SERLA73DRAFT_163336 Serpula lacrymans SERLA73DRAFT_163336 N
fgenesh1_pg.C_scaffold_8000500 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_8000500 N
fgenesh1_pg.C_scaffold_8000526 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_8000526 N
GLOTRDRAFT_44070 Gloeophyllum trabeum GLOTRDRAFT_44070 N
CC1G_08004 Coprinopsis cinerea CC1G_08004 N
CERSUDRAFT_94391 Ceriporiopsis subvermispora CERSUDRAFT_94391 N
CY34DRAFT_799919 Suillus luteus CY34DRAFT_799919 N
CY34DRAFT_810199 Suillus luteus CY34DRAFT_810199 N
CY34DRAFT_92559 Suillus luteus CY34DRAFT_92559 N
FIBRA_01765 Fibroporia radiculosa FIBRA_01765 N
FOMPIDRAFT_1027511 Fomitopsis pinicola FOMPIDRAFT_1027511 N
FOMPIDRAFT_112416 Fomitopsis pinicola FOMPIDRAFT_112416 N
GALMADRAFT_156783 Galerina marginata GALMADRAFT_156783 N
GLOTRDRAFT_43577 Gloeophyllum trabeum GLOTRDRAFT_43577 N
AGABI2DRAFT_204681 Agaricus bisporus AGABI2DRAFT_204681 N
GYMLUDRAFT_181224 Gymnopus luxurians GYMLUDRAFT_181224 N
HETIRDRAFT_317558 Heterobasidion irregulare HETIRDRAFT_317558 N
HYDPIDRAFT_137903 Hydnomerulius pinastri HYDPIDRAFT_137903 N
HYDPIDRAFT_181816 Hydnomerulius pinastri HYDPIDRAFT_181816 N
JAAARDRAFT_207038 Jaapia argillacea JAAARDRAFT_207038 N
JAAARDRAFT_66445 Jaapia argillacea JAAARDRAFT_66445 N
K443DRAFT_671578 Laccaria amethystina K443DRAFT_671578 N
K443DRAFT_672954 Laccaria amethystina K443DRAFT_672954 N
LACBIDRAFT_316437 Laccaria bicolor LACBIDRAFT_316437 N
M378DRAFT_103014 Amanita muscaria M378DRAFT_103014 N