CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CLOCK *(Oryctolagus cuniculus)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSOCUG00000022350	T036062_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Clock M01735_2.00	Mus musculus	NNCAYRTGNN	NNCAYRTGNN	PBM Weirauch et al.(2014) pTH5056	0.914	1.000
CLOCK M02789_2.00	Homo sapiens	DACACGTGYH	DRCACGTGTH	SELEX Jolma et al.(2013) CLOCK_1	0.914	1.000
CLOCK M04129_2.00	Homo sapiens	NMCACGTGYN	NRCACGTGKN	SELEX Yin et al.(2017) CLOCK_eDBD_HT-SELEX	0.914	1.000
CLOCK M08728_2.00	Homo sapiens	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_HUMAN.H11MO.0.C	0.914	1.000
Clock M08760_2.00	Mus musculus	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_MOUSE.H11MO.0.C	0.914	1.000
Clock M09473_2.00	Mus musculus	CACGTGNN	NNCACGTG	Misc Heinz et al.(2010) Liver-Clock_GSE39860	0.914	1.000
CLOCK M09849_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CLOCK_Q6	0.914	1.000
CLOCK M04130_2.00	Homo sapiens	NRCRCRTGBH	DVCAYGYGYN	SELEX Yin et al.(2017) CLOCK_eDBD_Methyl-HT-SELEX	0.914	1.000
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSOCUP00000024429	bHLH	35	85	KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK

Links
Other bHLH family TFs
Other *Oryctolagus cuniculus* TFs

77 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O1_01931	Capronia coronata	A1O1_01931	N
A1O5_06915	Cladophialophora psammophila	A1O5_06915	N
A1O7_05076	Cladophialophora yegresii	A1O7_05076	N
G647_03586	Cladophialophora carrionii	G647_03586	N
HMPREF1120_03433	Exophiala dermatitidis	HMPREF1120_03433	N
HMPREF1541_08871	Cyphellophora europaea	HMPREF1541_08871	N
PV04_04136	Capronia semiimmersa	PV04_04136	N
PV05_02453	Exophiala xenobiotica	PV05_02453	N
PV07_04943	Cladophialophora immunda	PV07_04943	N
PV08_09016	Exophiala spinifera	PV08_09016	N
PV11_01942	Exophiala sideris	PV11_01942	N
Z517_06070	Fonsecaea pedrosoi	Z517_06070	N
Z519_06584	Cladophialophora bantiana	Z519_06584	N