USF1 (Pteropus vampyrus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSPVAG00000005489 T037113_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000005195 bHLH 192 247

Links

Other bHLH family TFs
Other Pteropus vampyrus TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OLIG1 Homo sapiens ENSG00000184221 D
Alligator_sinensis_CCG013447.1 Alligator sinensis Alligator_sinensis_CCG013447.1 I 0.914
Olig1 Rattus norvegicus ENSRNOG00000028648 I
ENSSHAG00000004906 Sarcophilus harrisii ENSSHAG00000004906 I
ENSSHAG00000016124 Sarcophilus harrisii ENSSHAG00000016124 I 0.914
USF1 Sus scrofa ENSSSCG00000006371 I 0.914
OLIG1 Sus scrofa ENSSSCG00000012040 I
ENSSTOG00000012364 Ictidomys tridecemlineatus ENSSTOG00000012364 I 0.914
ENSSTOG00000027713 Ictidomys tridecemlineatus ENSSTOG00000027713 I
USF1 Tupaia belangeri ENSTBEG00000003164 I 0.914
USF1 Tursiops truncatus ENSTTRG00000009151 I 0.914
OLIG1 Vicugna pacos ENSVPAG00000005098 I
USF1 Vicugna pacos ENSVPAG00000008421 I 0.914
PHUM287950 Pediculus humanus PHUM287950 I 0.839
OLIG1 Pteropus vampyrus ENSPVAG00000001702 I
ENSMMUP00000002682 Macaca fascicularis ENSMMUP00000002682 I 0.914
ENSP00000357000-D1 Bos grunniens ENSP00000357000-D1 I 0.914
Ogr08237 Ophisaurus gracilis Ogr08237 I 0.914
Ogr17935 Ophisaurus gracilis Ogr17935 I
Pvit_07548 Pogona vitticeps Pvit_07548 I 0.914
Pvit_10684 Pogona vitticeps Pvit_10684 I
B39674 Xenopus laevis B39674 I 0.914
olig1 Xenopus tropicalis XB-GENE-478472 I
usf1 Xenopus tropicalis XB-GENE-5918718 I 0.914
usf1.S Xenopus laevis XB-GENE-6255904 I 0.914
OLIG1 Monodelphis domestica ENSMODG00000021070 I
OLIG1 Canis familiaris ENSCAFG00000031953 I
OLIG2 Callithrix jacchus ENSCJAG00000009439 I
ENSCPOG00000020839 Cavia porcellus ENSCPOG00000020839 I
ENSCSAG00000018686 Chlorocebus sabaeus ENSCSAG00000018686 I
OLIG1 Dasypus novemcinctus ENSDNOG00000042196 I
ENSETEG00000011024 Echinops telfairi ENSETEG00000011024 I
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I 0.861
ENSLAFG00000007964 Loxodonta africana ENSLAFG00000007964 I
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I 0.843
ENSLOCG00000017507 Lepisosteus oculatus ENSLOCG00000017507 I
OLIG1 Macaca mulatta ENSMMUG00000001558 I
Usf1 Rattus norvegicus ENSRNOG00000004255 I 0.914
ENSMPUG00000014181 Mustela putorius furo ENSMPUG00000014181 I 0.912
Olig1 Mus musculus ENSMUSG00000046160 I
ENSNLEG00000003823 Nomascus leucogenys ENSNLEG00000003823 I
ENSOANG00000002423 Ornithorhynchus anatinus ENSOANG00000002423 I
OLIG1 Oryctolagus cuniculus ENSOCUG00000027389 I
OLIG1 Otolemur garnettii ENSOGAG00000033584 I
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I 0.874
ENSPSIG00000008116 Pelodiscus sinensis ENSPSIG00000008116 I 0.914
USF1 Pan troglodytes ENSPTRG00000001565 I 0.914
OLIG1 Pan troglodytes ENSPTRG00000031440 I
OLIG1 Bos taurus ENSBTAG00000037547 I