CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CLOCK *(Sus scrofa)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00010 (HLH)	IPR001092	ENSSSCG00000008909	T037419_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Clock M01735_2.00	Mus musculus	NNCAYRTGNN	NNCAYRTGNN	PBM Weirauch et al.(2014) pTH5056	0.914	1.000
CLOCK M02789_2.00	Homo sapiens	DACACGTGYH	DRCACGTGTH	SELEX Jolma et al.(2013) CLOCK_1	0.914	1.000
CLOCK M04129_2.00	Homo sapiens	NMCACGTGYN	NRCACGTGKN	SELEX Yin et al.(2017) CLOCK_eDBD_HT-SELEX	0.914	1.000
CLOCK M08728_2.00	Homo sapiens	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_HUMAN.H11MO.0.C	0.914	1.000
Clock M08760_2.00	Mus musculus	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_MOUSE.H11MO.0.C	0.914	1.000
Clock M09473_2.00	Mus musculus	CACGTGNN	NNCACGTG	Misc Heinz et al.(2010) Liver-Clock_GSE39860	0.914	1.000
CLOCK M09849_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CLOCK_Q6	0.914	1.000
CLOCK M04130_2.00	Homo sapiens	NRCRCRTGBH	DVCAYGYGYN	SELEX Yin et al.(2017) CLOCK_eDBD_Methyl-HT-SELEX	0.914	1.000
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSSSCP00000009503	bHLH	35	85	KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK

Links
Other bHLH family TFs
Other *Sus scrofa* TFs

77 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Zfp691	Mus musculus	ENSMUSG00000045268	D
Myotis_brandtii_ZNF691_10016788	Myotis brandtii	Myotis_brandtii_ZNF691_10016788	I
ENSAMEG00000019766	Ailuropoda melanoleuca	ENSAMEG00000019766	I
ENSP00000394189	Macaca fascicularis	ENSP00000394189	I
ENSSTOG00000000130	Ictidomys tridecemlineatus	ENSSTOG00000000130	I
Zfp691	Rattus norvegicus	ENSRNOG00000007398	I
ZNF691	Pan troglodytes	ENSPTRG00000000622	I
ENSPANG00000009481	Papio anubis	ENSPANG00000009481	I
ZNF691	Otolemur garnettii	ENSOGAG00000002081	I
ENSNLEG00000012359	Nomascus leucogenys	ENSNLEG00000012359	I
ENSMMUG00000020414	Macaca mulatta	ENSMMUG00000020414	I
ZNF691	Myotis lucifugus	ENSMLUG00000013638	I
ZNF691	Gorilla gorilla	ENSGGOG00000009549	I
ZNF691	Homo sapiens	ENSG00000164011	I
ZNF691	Equus caballus	ENSECAG00000013086	I
ENSCSAG00000001174	Chlorocebus sabaeus	ENSCSAG00000001174	I
ZNF691	Callithrix jacchus	ENSCJAG00000003267	I
ZNF691	Canis familiaris	ENSCAFG00000002505	I
ZNF691	Microcebus murinus	ENSMICG00000014797	N
ZNF691	Ochotona princeps	ENSOPRG00000004767	N
ZNF691	Erinaceus europaeus	ENSEEUG00000006451	N
ZNF691	Pteropus vampyrus	ENSPVAG00000017475	N
ZNF691	Tupaia belangeri	ENSTBEG00000016521	N
ZNF691	Choloepus hoffmanni	ENSCHOG00000010701	N