USF1 (Tupaia belangeri)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTBEG00000003164 T037572_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTBEP00000002731 bHLH 142 197

Links

Other bHLH family TFs
Other Tupaia belangeri TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OIDMADRAFT_72735 Oidiodendron maius OIDMADRAFT_72735 N
W97_05320 Coniosporium apollinis W97_05320 N
VDBG_04344 Verticillium alfalfae VDBG_04344 N
VDAG_09033 Verticillium dahliae VDAG_09033 N
V499_01312 Pseudogymnoascus pannorum V499_01312 N
UV8b_3206 Ustilaginoidea virens UV8b_3206 N
U727_00430311441 Penicillium solitum U727_00430311441 N
TESG_07096 Trichophyton tonsurans TESG_07096 N
TEQG_05685 Trichophyton equinum TEQG_05685 N
SNOG_12765 Phaeosphaeria nodorum SNOG_12765 N
SETTUDRAFT_155346 Setosphaeria turcica SETTUDRAFT_155346 N
S40288_02610 Stachybotrys chartarum S40288_02610 N
S40285_04014 Stachybotrys chlorohalonata S40285_04014 N
PV11_07762 Exophiala sideris PV11_07762 N
PEX1_055770 Penicillium expansum PEX1_055770 N
PDIP_15270 Penicillium digitatum PDIP_15270 N
MCYG_02571 Microsporum canis MCYG_02571 N
NEUTE1DRAFT_145502 Neurospora tetrasperma NEUTE1DRAFT_145502 N
MCYG_02571 Arthroderma otae MCYG_02571 N
LEMA_P057910.1 Leptosphaeria maculans LEMA_P057910.1 N
HCBG_07168 Histoplasma capsulatum HCBG_07168 N
H101_00195 Trichophyton interdigitale H101_00195 N
GSTUM_00009064001 Tuber melanosporum GSTUM_00009064001 N
FFUJ_12262 Fusarium fujikuroi FFUJ_12262 N
F503_04971 Ophiostoma piceae uamh F503_04971 N
CSUB01_01897 Colletotrichum sublineola CSUB01_01897 N
CMQ_1168 Grosmannia clavigera CMQ_1168 N
CH063_08271 Colletotrichum higginsianum CH063_08271 N
CADANGAG00011028 Aspergillus niger CADANGAG00011028 N
AFUA_4G03960 Aspergillus fumigatus CADAFUAG00001413 N
ACRE_078720 Acremonium chrysogenum ACRE_078720 N
VDBG_04344 Verticillium albo atrum VDBG_04344 N