usf1 (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000014361 T037775_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
USF2
M04076_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX 		0.876 0.889
USF2
M08050_2.00 		Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN		 ChIP-seq
Mathelier et al.(2014)
MA0526.2 		0.876 0.889
USF2
M07785_2.00 		Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford 		0.876 0.889
USF2
M07786_2.00 		Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford 		0.876 0.889
USF2
M07787_2.00 		Homo sapiens
RGTCACGTGVB
VBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford 		0.876 0.889
USF2
M07788_2.00 		Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford 		0.876 0.889
USF2
M07789_2.00 		Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford 		0.876 0.889
USF2
M08715_2.00 		Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN		 Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A 		0.876 0.889
USF2
M09812_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_01 		0.876 0.889
USF2
M09813_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_02 		0.876 0.889
USF2
M09814_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6_01 		0.876 0.889
USF2
M09815_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$USF2_Q6 		0.876 0.889
USF2
M04077_2.00 		Homo sapiens
VNCAYGTGACN
NGTCACRTGNB		 SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX 		0.876 0.889
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000017378 bHLH 184 239

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZXDC Pan troglodytes ENSPTRG00000015332 N
ENSNLEG00000001066 Nomascus leucogenys ENSNLEG00000001066 N
ENSOARG00000005360 Ovis aries ENSOARG00000005360 N
ENSOCUG00000003505 Oryctolagus cuniculus ENSOCUG00000003505 N
ZXDC Oryctolagus cuniculus ENSOCUG00000022942 N
ENSOGAG00000009487 Otolemur garnettii ENSOGAG00000009487 N
ENSOGAG00000025034 Otolemur garnettii ENSOGAG00000025034 N
ZXDC Otolemur garnettii ENSOGAG00000028511 N
ENSPANG00000000433 Papio anubis ENSPANG00000000433 N
ENSPANG00000023784 Papio anubis ENSPANG00000023784 N
ENSPCAG00000012425 Procavia capensis ENSPCAG00000012425 N
ENSPPYG00000013453 Pongo abelii ENSPPYG00000013453 N
ENSPPYG00000020407 Pongo abelii ENSPPYG00000020407 N
ENSPPYG00000020408 Pongo abelii ENSPPYG00000020408 N
Zxdc Mus musculus ENSMUSG00000034430 N
ZXDA Pan troglodytes ENSPTRG00000021962 N
ZXDB Pan troglodytes ENSPTRG00000028265 N
Zxdc Rattus norvegicus ENSRNOG00000025818 N
ENSSARG00000007588 Sorex araneus ENSSARG00000007588 N
ENSSSCG00000012359 Sus scrofa ENSSSCG00000012359 N
ENSSTOG00000021364 Ictidomys tridecemlineatus ENSSTOG00000021364 N
ENSTBEG00000001799 Tupaia belangeri ENSTBEG00000001799 N
ENSTSYG00000007412 Tarsius syrichta ENSTSYG00000007412 N
ENSTTRG00000004499 Tursiops truncatus ENSTTRG00000004499 N
ENSP00000351530-D2 Bos grunniens ENSP00000351530-D2 N
ENSP00000351530 Macaca fascicularis ENSP00000351530 N
ENSP00000364023-D1 Bos grunniens ENSP00000364023-D1 N
ENSP00000364023 Macaca fascicularis ENSP00000364023 N
ZXDC Homo sapiens ENSG00000070476 N
ENSBTAG00000008911 Bos taurus ENSBTAG00000008911 N
ZXDC Bos taurus ENSBTAG00000009874 N
ENSBTAG00000031523 Bos taurus ENSBTAG00000031523 N
ZXDC Canis familiaris ENSCAFG00000003826 N
ENSCAFG00000016517 Canis familiaris ENSCAFG00000016517 N
ENSCJAG00000003009 Callithrix jacchus ENSCJAG00000003009 N
ZXDC Cavia porcellus ENSCPOG00000002150 N
ENSCPOG00000005007 Cavia porcellus ENSCPOG00000005007 N
ENSCSAG00000008075 Chlorocebus sabaeus ENSCSAG00000008075 N
ENSCSAG00000019499 Chlorocebus sabaeus ENSCSAG00000019499 N
ENSCSAG00000019500 Chlorocebus sabaeus ENSCSAG00000019500 N
ENSDNOG00000007340 Dasypus novemcinctus ENSDNOG00000007340 N
ENSFCAG00000005774 Felis catus ENSFCAG00000005774 N
ENSAMEG00000006438 Ailuropoda melanoleuca ENSAMEG00000006438 N
ZXDA Homo sapiens ENSG00000198205 N
ZXDB Homo sapiens ENSG00000198455 N
ZXDC Gorilla gorilla ENSGGOG00000009938 N
ZXDB Gorilla gorilla ENSGGOG00000011651 N
ZXDA Gorilla gorilla ENSGGOG00000024746 N
ENSLAFG00000017963 Loxodonta africana ENSLAFG00000017963 N
ENSMICG00000009255 Microcebus murinus ENSMICG00000009255 N
ENSMMUG00000004920 Macaca mulatta ENSMMUG00000004920 N
ZXDA Macaca mulatta ENSMMUG00000019432 N
ENSMODG00000007443 Monodelphis domestica ENSMODG00000007443 N
ENSMPUG00000015900 Mustela putorius furo ENSMPUG00000015900 N
ENSMPUG00000017379 Mustela putorius furo ENSMPUG00000017379 N
ENSMPUG00000019780 Mustela putorius furo ENSMPUG00000019780 N