clocka (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000001837 T037821_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 0.920
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 0.920
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 0.920
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 0.920
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 0.920
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 0.920
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 0.920
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000004233 bHLH 37 86
ENSTRUP00000004234 bHLH 37 86
ENSTRUP00000004235 bHLH 26 75
ENSTRUP00000004236 bHLH 20 69
ENSTRUP00000004237 bHLH 25 74

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CLOCK Homo sapiens ENSG00000134852 D 0.914
Clock Mus musculus ENSMUSG00000029238 D 0.914
Clock Rattus norvegicus ENSRNOG00000002175 I 0.914
clockb Tetraodon nigroviridis ENSTNIG00000017652 I 0.914
clocka Tetraodon nigroviridis ENSTNIG00000004102 I 0.914
ENSTGUG00000007495 Taeniopygia guttata ENSTGUG00000007495 I 0.914
CLOCK Tupaia belangeri ENSTBEG00000002540 I 0.914
ENSSTOG00000016179 Ictidomys tridecemlineatus ENSSTOG00000016179 I 0.914
CLOCK Sus scrofa ENSSSCG00000008909 I 0.914
ENSSHAG00000005555 Sarcophilus harrisii ENSSHAG00000005555 I 0.914
CLOCK Sorex araneus ENSSARG00000002584 I 0.914
clockb Takifugu rubripes ENSTRUG00000015488 I 0.893
CLOCK Pteropus vampyrus ENSPVAG00000008960 I 0.914
CLOCK Pan troglodytes ENSPTRG00000016072 I 0.914
ENSPSIG00000011404 Pelodiscus sinensis ENSPSIG00000011404 I 0.914
ENSPPYG00000014762 Pongo abelii ENSPPYG00000014762 I 0.914
ENSPFOG00000017215 Poecilia formosa ENSPFOG00000017215 I 0.914
ENSPFOG00000015083 Poecilia formosa ENSPFOG00000015083 I 0.914
CLOCK Procavia capensis ENSPCAG00000001407 I 0.914
ENSPANG00000006882 Papio anubis ENSPANG00000006882 I 0.914
ENSMMUP00000002568 Macaca fascicularis ENSMMUP00000002568 I 0.914
clock.L Xenopus laevis XB-GENE-6254406 I 0.881
clock Xenopus tropicalis XB-GENE-495448 I 0.881
SNAPOd2T00001991001 Oikopleura dioica SNAPOd2T00001991001 I 0.838
Tal_R002573 Tyto alba Tal_R002573 I 0.914
Pvit_07605 Pogona vitticeps Pvit_07605 I 0.914
Ogr11799 Ophisaurus gracilis Ogr11799 I 0.914
Myotis_brandtii_Clock_10026771 Myotis brandtii Myotis_brandtii_Clock_10026771 I 0.914
Gfo_R010434 Geospiza fortis Gfo_R010434 I 0.914
ENSP00000370723-D1 Bos grunniens ENSP00000370723-D1 I 0.914
CLOCK Ochotona princeps ENSOPRG00000005292 I 0.914
Brh_R001802 Buceros rhinoceros Brh_R001802 I 0.914
Afo_R013414 Aptenodytes forsteri Afo_R013414 I 0.914
Aan_R004160 Calypte anna Aan_R004160 I 0.914
ENSXMAG00000017672 Xiphophorus maculatus ENSXMAG00000017672 I 0.914
ENSXMAG00000016928 Xiphophorus maculatus ENSXMAG00000016928 I 0.914
CLOCK Vicugna pacos ENSVPAG00000006438 I 0.914
CLOCK Tursiops truncatus ENSTTRG00000000960 I 0.914
ENSTSYG00000003546 Tarsius syrichta ENSTSYG00000003546 I 0.914
ENSCSAG00000005019 Chlorocebus sabaeus ENSCSAG00000005019 I 0.914
CLOCK Gallus gallus ENSGALG00000013793 I 0.914
clocka Gasterosteus aculeatus ENSGACG00000015939 I 0.914
CLOCK Felis catus ENSFCAG00000001064 I 0.914
ENSFALG00000003646 Ficedula albicollis ENSFALG00000003646 I 0.914
CLOCK Echinops telfairi ENSETEG00000015604 I 0.914
CLOCK Equus caballus ENSECAG00000006331 I 0.914
CLOCK Dasypus novemcinctus ENSDNOG00000018101 I 0.914
clocka Danio rerio ENSDARG00000011703 I 0.914
clockb Danio rerio ENSDARG00000003631 I 0.882
CLOCK Gorilla gorilla ENSGGOG00000005753 I 0.914
CLOCK Cavia porcellus ENSCPOG00000011807 I 0.914
CLOCK Callithrix jacchus ENSCJAG00000018261 I 0.914
CLOCK Canis familiaris ENSCAFG00000002140 I 0.914
CLOCK Bos taurus ENSBTAG00000044044 I 0.914
ENSAPLG00000007176 Anas platyrhynchos ENSAPLG00000007176 I 0.914
ENSAMXG00000021792 Astyanax mexicanus ENSAMXG00000021792 I 0.914
ENSAMXG00000005565 Astyanax mexicanus ENSAMXG00000005565 I 0.914
ENSAMEG00000018420 Ailuropoda melanoleuca ENSAMEG00000018420 I 0.914
CLOCK Monodelphis domestica ENSMODG00000020678 I 0.914
CLOCK Anolis carolinensis ENSACAG00000009335 I 0.914
ENSONIG00000008797 Oreochromis niloticus ENSONIG00000008797 I 0.914
ENSONIG00000002943 Oreochromis niloticus ENSONIG00000002943 I 0.914
CLOCK Otolemur garnettii ENSOGAG00000012464 I 0.914
CLOCK Oryctolagus cuniculus ENSOCUG00000022350 I 0.914
ENSOARG00000001602 Ovis aries ENSOARG00000001602 I 0.914
CLOCK Ornithorhynchus anatinus ENSOANG00000003801 I 0.890
ENSNLEG00000008499 Nomascus leucogenys ENSNLEG00000008499 I 0.914
ENSMPUG00000005091 Mustela putorius furo ENSMPUG00000005091 I 0.914
clocka Oryzias latipes ENSORLG00000004495 I 0.914
CLOCK Macaca mulatta ENSMMUG00000001919 I 0.914
CLOCK Myotis lucifugus ENSMLUG00000010007 I 0.914
CLOCK Meleagris gallopavo ENSMGAG00000011742 I 0.914
ENSMEUG00000005481 Macropus eugenii ENSMEUG00000005481 I 0.914
ENSLOCG00000014043 Lepisosteus oculatus ENSLOCG00000014043 I 0.914
CLOCK Loxodonta africana ENSLAFG00000009558 I 0.914
ENSLACG00000013436 Latimeria chalumnae ENSLACG00000013436 I 0.914
ENSGMOG00000004825 Gadus morhua ENSGMOG00000004825 I 0.914