OMERI12G13210 (Oryza meridionalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OMERI12G13210 T042566_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.911 0.920
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.898 0.900
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.898 0.900
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.920
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.920
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.920
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.920
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.920
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.920
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.868 0.900
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.868 0.900
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.868 0.900
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.860 0.880
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.854 0.640
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.854 0.600
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI12G13210.1 bHLH 275 326

Links

Other bHLH family TFs
Other Oryza meridionalis TFs

491 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_04s0008g00900 Vitis vinifera VIT_04s0008g00900 I
LjSGA_061558.1 Lotus japonicus LjSGA_061558.1 I
Pavir.J38363 Panicum virgatum Pavir.J38363 I
Pavir.J35324 Panicum virgatum Pavir.J35324 I
Pavir.J01328 Panicum virgatum Pavir.J01328 I
Pavir.Eb00103 Panicum virgatum Pavir.Eb00103 I
orange1.1g038601m.g Citrus sinensis orange1.1g038601m.g I
Lus10027781.g Linum usitatissimum Lus10027781.g I
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I
Ciclev10009011m.g Citrus clementina Ciclev10009011m.g I
mgf026007m Mimulus guttatus mgf026007m I
Cucsa.397260 Cucumis sativus Cucsa.397260 I
F775_18928 Aegilops tauschii F775_18928 I
Traes_3DS_DF23FE973 Triticum aestivum Traes_3DS_DF23FE973 I
Si022624m.g Setaria italica Si022624m.g I
Sb09g030390 Sorghum bicolor Sb09g030390 I
Sb09g006060 Sorghum bicolor Sb09g006060 I
OBART05G18640 Oryza barthii OBART05G18640 I
MTR_3g104370 Medicago truncatula MTR_3g104370 I
MLOC_52982 Hordeum vulgare MLOC_52982 I
LPERR05G23440 Leersia perrieri LPERR05G23440 I
GRMZM2G176568 Zea mays GRMZM2G176568 I
GLYMA17G34791 Glycine max GLYMA17G34791 I
GLYMA06G05450 Glycine max GLYMA06G05450 I
GLYMA04G05390 Glycine max GLYMA04G05390 I
estExt_fgeneshCV_pg.C_60079 Chlorella vulgaris estExt_fgeneshCV_pg.C_60079 N