Alligator_sinensis_CCG018129.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG018129.1 T046675_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.724 1.000
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.724 1.000
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.724 1.000
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.724 1.000
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.724 1.000
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.724 1.000
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.724 1.000
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.724 1.000
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.724 1.000
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.724 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG018129.1 bHLH 1 41

Links

Other bHLH family TFs
Other Alligator sinensis TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMPREF1120_05596 Exophiala dermatitidis HMPREF1120_05596 I 0.000
PV06_11257 Exophiala oligosperma PV06_11257 N 0.000
KUCA_T00005495001 Kuraishia capsulata KUCA_T00005495001 N 0.000
LEMA_P012820.1 Leptosphaeria maculans LEMA_P012820.1 N 0.000
MGG_14816 Magnaporthe oryzae MGG_14816 N 0.000
NechaG88155 Fusarium solani NechaG88155 N 0.000
PCH_Pc13g03330 Penicillium rubens PCH_Pc13g03330 N 0.000
PFICI_00049 Pestalotiopsis fici PFICI_00049 N 0.000
PTRG_10883 Pyrenophora triticirepentis PTRG_10883 N 0.000
PTT_06689 Pyrenophora teres PTT_06689 N 0.000
PV05_04423 Exophiala xenobiotica PV05_04423 N 0.000
PV06_07837 Exophiala oligosperma PV06_07837 N 0.000
KUCA_T00003996001 Kuraishia capsulata KUCA_T00003996001 N 0.000
PV06_11661 Exophiala oligosperma PV06_11661 N 0.000
PV06_11680 Exophiala oligosperma PV06_11680 N 0.000
PV08_03348 Exophiala spinifera PV08_03348 N 0.000
PV11_03278 Exophiala sideris PV11_03278 N 0.000
SETTUDRAFT_92771 Setosphaeria turcica SETTUDRAFT_92771 N 0.000
SNOG_11030 Phaeosphaeria nodorum SNOG_11030 N 0.000
VHEMI00089 Torrubiella hemipterigena VHEMI00089 N 0.000
estExt_Genewise1Plus.C_70733 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_70733 N 0.000
fgenesh1_pg.sca_28_chr13_5_0000057 Nectria haematococca fgenesh1_pg.sca_28_chr13_5_0000057 N 0.000
Pc13g03330 Penicillium chrysogenum Pc13g03330 N 0.000
COCSADRAFT_34052 Bipolaris sorokiniana COCSADRAFT_34052 N 0.000
A1O1_00464 Capronia coronata A1O1_00464 N 0.000
CADAFLAG00003334 Aspergillus flavus CADAFLAG00003334 N 0.000
ANIA_01584 Aspergillus nidulans CADANIAG00008217 N 0.000
CFIO01_01654 Colletotrichum fioriniae CFIO01_01654 N 0.000
COCC4DRAFT_130965 Bipolaris maydis COCC4DRAFT_130965 N 0.000
COCC4DRAFT_157715 Bipolaris maydis COCC4DRAFT_157715 N 0.000
COCCADRAFT_34908 Bipolaris zeicola COCCADRAFT_34908 N 0.000
COCCADRAFT_40088 Bipolaris zeicola COCCADRAFT_40088 N 0.000
COCMIDRAFT_30122 Bipolaris oryzae COCMIDRAFT_30122 N 0.000
COCSADRAFT_130198 Bipolaris sorokiniana COCSADRAFT_130198 N 0.000
KUCA_T00004747001 Kuraishia capsulata KUCA_T00004747001 N 0.000
COCVIDRAFT_107313 Bipolaris victoriae COCVIDRAFT_107313 N 0.000
COCVIDRAFT_20793 Bipolaris victoriae COCVIDRAFT_20793 N 0.000
EURHEDRAFT_415639 Aspergillus ruber EURHEDRAFT_415639 N 0.000
FFUJ_11117 Fusarium fujikuroi FFUJ_11117 N 0.000
HMPREF1120_00198 Exophiala dermatitidis HMPREF1120_00198 N 0.000
HMPREF1624_03990 Sporothrix schenckii HMPREF1624_03990 N 0.000
KUCA_T00000009001 Kuraishia capsulata KUCA_T00000009001 N 0.000
KUCA_T00000013001 Kuraishia capsulata KUCA_T00000013001 N 0.000
KUCA_T00003114001 Kuraishia capsulata KUCA_T00003114001 N 0.000
SNOG_11030 Stagonospora nodorum SNOG_11030 N 0.000