Gfo_R005253 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R005253 T047320_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcfl5
M01744_2.00 		Mus musculus
NBCDCGHGVN
NBCDCGHGVN		 PBM
Weirauch et al.(2014)
pTH4576 		0.881 0.920
TCFL5
M04074_2.00 		Homo sapiens
KCRCGCGCHC
GDGCGCGYGM		 SELEX
Yin et al.(2017)
TCFL5_eDBD_HT-SELEX 		0.881 0.920
TCFL5
M04075_2.00 		Homo sapiens
BCRCGCGCMC
GKGCGCGYGV		 SELEX
Yin et al.(2017)
TCFL5_eDBD_Methyl-HT-SELEX 		0.881 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R005253 bHLH 408 458

Links

Other bHLH family TFs
Other Geospiza fortis TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DAPPUDRAFT_307821 Daphnia pulex DAPPUDRAFT_307821 I
ENSLOCG00000011733 Lepisosteus oculatus ENSLOCG00000011733 I
ENSPFOG00000008177 Poecilia formosa ENSPFOG00000008177 I
TC004149 Tribolium castaneum TC004149 I
YQE_09206 Dendroctonus ponderosae YQE_09206 I
estExt_fgenesh2_pg.C_2600015 Branchiostoma floridae estExt_fgenesh2_pg.C_2600015 I
estExt_fgenesh2_pg.C_5440008 Branchiostoma floridae estExt_fgenesh2_pg.C_5440008 I
Ocbimv22001599m.g Octopus bimaculoides Ocbimv22001599m.g I
ENSCING00000003373 Ciona intestinalis ENSCING00000003373 N
ENSCSAVG00000003043 Ciona savignyi ENSCSAVG00000003043 N
LotgiG118868 Lottia gigantea LotgiG118868 N
SPU_008752 Strongylocentrotus purpuratus SPU_008752 N