CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava22165.valid.m1 *(Manihot esculenta)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	cassava22165.valid.m1	T047996_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
e_gw1.209.40.1 M01756_2.00	Physcomitrella patens	NNCACGTGNN	NNCACGTGNN	PBM Weirauch et al.(2014) pTH8070	0.914	0.979
LRL2 M06738_2.00	Arabidopsis thaliana	CACGTGSVDMNCACG	CGTGNKHBSCACGTG	Dap-seq OMalley et al.(2016) bHLH69_col_a	0.914	0.938
SPT M01709_2.00	Arabidopsis thaliana	NCACGTGSN	NSCACGTGN	PBM Weirauch et al.(2014) pTH8111	0.885	0.646
PIF3 M00854_2.00	Arabidopsis thaliana	CACGTGSNN	NNSCACGTG	PBM Franco-Zorrilla et al.(2014) PIF3	0.872	0.646
PIF3 M00722_2.00	Arabidopsis thaliana	NCACRTN	NAYGTGN	PBM Chang et al.(2013) pTH8200	0.872	0.646
PK05451.1 M01120_2.00	Cannabis sativa	YCACGTGM	KCACGTGR	PBM Lambert et al.(2019) pTH10100	0.872	0.646
PIF3 M08045_2.00	Arabidopsis thaliana	HCACGTGGVH	DBCCACGTGD	ChIP-seq Mathelier et al.(2014) MA0560.1	0.872	0.646
PIF3 M09780_2.00	Arabidopsis thaliana	BDRRRVCACGTGRVSHCD	HGDSBYCACGTGBYYYHV	Transfac Matys et al.(2006) P$PIF3_01	0.872	0.646
PIF3 M09781_2.00	Arabidopsis thaliana	DDDVCCACGTGGVMVNB	VNBKBCCACGTGGBHHH	Transfac Matys et al.(2006) P$PIF3_02	0.872	0.646
PIF4 M08046_2.00	Arabidopsis thaliana	CACGTGSV	BSCACGTG	ChIP-seq Mathelier et al.(2014) MA0561.1	0.858	0.667
PIF5 M08047_2.00	Arabidopsis thaliana	YCACRTGS	SCAYGTGR	ChIP-seq Mathelier et al.(2014) MA0562.1	0.845	0.646
PIF5 M09452_2.00	Arabidopsis thaliana	NNBCAYGTGV	BCACRTGVNN	Misc Heinz et al.(2010) Arabidopsis-PIF5ox_GSE35062	0.845	0.646
PIF1 M01703_2.00	Arabidopsis thaliana	NNCACGTGNN	NNCACGTGNN	PBM Weirauch et al.(2014) pTH8733	0.845	0.667
PIF1 M08404_2.00	Arabidopsis thaliana	NCACGTGWSNYNHH	DDNRNSWCACGTGN	ChIP-chip Mathelier et al.(2014) MA0552.1	0.845	0.667
PIF1 M09783_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PIF1_01	0.845	0.667
For this family, TFs with SR scores > 0.838* will likely have a similar motif*