fgenesh2_pg.scaffold_201000028 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_201000028 T048575_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf21
M01746_2.00 		Mus musculus
RMCAKMTGK
MCAKMTGKY		 PBM
Weirauch et al.(2014)
pTH5087 		0.862 0.846
Tcf21
M02819_2.00 		Mus musculus
VNAACAGCTGTTVN
NBAACAGCTGTTNB		 SELEX
Jolma et al.(2013)
Tcf21_1 		0.862 0.846
TCF21
M04092_2.00 		Homo sapiens
BAACAGCTGBYN
NRVCAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_1 		0.862 0.846
TCF21
M04093_2.00 		Homo sapiens
NRCCATATGKYV
BRMCATATGGYN		 SELEX
Yin et al.(2017)
TCF21_eDBD_HT-SELEX_2 		0.862 0.846
TCF21
M04094_2.00 		Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_1 		0.862 0.846
TCF21
M04095_2.00 		Homo sapiens
BACCATATGKYV
BRMCATATGGTV		 SELEX
Yin et al.(2017)
TCF21_eDBD_Methyl-HT-SELEX_2 		0.862 0.846
Msc
M01730_2.00 		Mus musculus
NVCRKMYGBN
NVCRKMYGBN		 PBM
Weirauch et al.(2014)
pTH5112 		0.862 0.827
MSC
M02801_2.00 		Homo sapiens
AACAGCTGTT
AACAGCTGTT		 SELEX
Jolma et al.(2013)
MSC_1 		0.862 0.827
MSC
M04183_2.00 		Homo sapiens
NRMCAGMTGBYN
NRVCAKCTGKYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_1 		0.862 0.827
MSC
M04184_2.00 		Homo sapiens
NRVCAYVTGBYN
NRVCABRTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_HT-SELEX_2 		0.862 0.827
MSC
M04187_2.00 		Homo sapiens
NRMCAGCTGBYV
BRVCAGCTGKYN		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_1 		0.862 0.827
MSC
M04188_2.00 		Homo sapiens
BRMCATATGKYN
NRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_HT-SELEX_2 		0.862 0.827
MSC
M04185_2.00 		Homo sapiens
NRVCAGCTGBBN
NVVCAGCTGBYN		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_1 		0.862 0.827
MSC
M04186_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_eDBD_Methyl-HT-SELEX_2 		0.862 0.827
MSC
M04189_2.00 		Homo sapiens
BRACAGCTGTYV
BRACAGCTGTYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_1 		0.862 0.827
MSC
M04190_2.00 		Homo sapiens
BRMCATATGKYV
BRMCATATGKYV		 SELEX
Yin et al.(2017)
MSC_FL_Methyl-HT-SELEX_2 		0.862 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_201000028 bHLH 71 123

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ada-1 Neurospora crassa NCU00499 D
ANIA_01536 Aspergillus nidulans CADANIAG00008163 D
MYCTH_2297012 Myceliophthora thermophila MYCTH_2297012 I
S40288_07855 Stachybotrys chartarum S40288_07855 I
S40285_00620 Stachybotrys chlorohalonata S40285_00620 I
PMAA_009160 Talaromyces marneffei PMAA_009160 I
PFICI_01318 Pestalotiopsis fici PFICI_01318 I
PDE_06458 Penicillium oxalicum PDE_06458 I
OCS_03094 Ophiocordyceps sinensis OCS_03094 I
NEUTE1DRAFT_119203 Neurospora tetrasperma NEUTE1DRAFT_119203 I
NechaG90126 Fusarium solani NechaG90126 I
TRIATDRAFT_182347 Trichoderma atroviride TRIATDRAFT_182347 I
MPH_00439 Macrophomina phaseolina MPH_00439 I
MGU_02844 Metarhizium guizhouense MGU_02844 I
MGG_04758 Magnaporthe oryzae MGG_04758 I
VDBG_04532 Verticillium albo atrum VDBG_04532 I
MBM_02315 Marssonina brunnea MBM_02315 I
THITE_2112457 Thielavia terrestris THITE_2112457 I
MBR_03350 Metarhizium brunneum MBR_03350 I
TRIREDRAFT_73654 Trichoderma reesei TRIREDRAFT_73654 I
TRIVIDRAFT_212339 Trichoderma virens TRIVIDRAFT_212339 I
TSTA_058790 Talaromyces stipitatus TSTA_058790 I
UCRNP2_4189 Neofusicoccum parvum UCRNP2_4189 I
UCRPA7_6727 Togninia minima UCRPA7_6727 I
UV8b_4299 Ustilaginoidea virens UV8b_4299 I
VDBG_04532 Verticillium alfalfae VDBG_04532 I
W97_01077 Coniosporium apollinis W97_01077 I
estExt_fgenesh3_kg.C_40162 Neurospora discreta estExt_fgenesh3_kg.C_40162 I
fgenesh1_pm.sca_1_chr1_3_0000259 Nectria haematococca fgenesh1_pm.sca_1_chr1_3_0000259 I
fgenesh1_pg.C_scaffold_5000767 Cryphonectria parasitica fgenesh1_pg.C_scaffold_5000767 I
PMAA_009160 Penicillium marneffei PMAA_009160 I
MANI_001414 Metarhizium anisopliae MANI_001414 I
ACRE_062880 Acremonium chrysogenum ACRE_062880 I
BGHDH14_bgh02127 Blumeria graminis BGHDH14_bgh02127 I
CADANGAG00013191 Aspergillus niger CADANGAG00013191 I
ATEG_04779 Aspergillus terreus CADATEAG00007874 I
CFIO01_10230 Colletotrichum fioriniae CFIO01_10230 I
CGGC5_7534 Colletotrichum gloeosporioides CGGC5_7534 I
CH063_11966 Colletotrichum higginsianum CH063_11966 I
CHGG_05948 Chaetomium globosum CHGG_05948 I
CMQ_48 Grosmannia clavigera CMQ_48 I
Cob_12403 Colletotrichum orbiculare Cob_12403 I
CSUB01_03595 Colletotrichum sublineola CSUB01_03595 I
CTHT_0003390 Chaetomium thermophilum CTHT_0003390 I
F503_03145 Ophiostoma piceae uamh F503_03145 I
GLRG_01353 Colletotrichum graminicola GLRG_01353 I
MAPG_06371 Magnaporthe poae MAPG_06371 I
MAM_01947 Metarhizium album MAM_01947 I
MAJ_00756 Metarhizium majus MAJ_00756 I
MAC_02987 Metarhizium acridum MAC_02987 I
M7I_4877 Glarea lozoyensis M7I_4877 I
FFUJ_01033 Fusarium fujikuroi FFUJ_01033 I
GGTG_01969 Gaeumannomyces graminis GGTG_01969 I
FVEG_00971 Fusarium verticillioides FVEG_00971 I
FPSE_04421 Fusarium pseudograminearum FPSE_04421 I
FOXG_00543 Fusarium oxysporum FOXG_00543 I
FGRRES_00515 Fusarium graminearum FGRRES_00515 I
OIDMADRAFT_129628 Oidiodendron maius OIDMADRAFT_129628 N
GMDG_05105 Pseudogymnoascus destructans GMDG_05105 N
V499_03811 Pseudogymnoascus pannorum V499_03811 N
CCM_06226 Cordyceps militaris CCM_06226 N
SS1G_01411 Sclerotinia sclerotiorum SS1G_01411 N
Bcin02g04140 Botrytis cinerea Bcin02g04140 N
SBOR_6525 Sclerotinia borealis SBOR_6525 N