CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

evm.TU.supercontig_84.89 *(Carica papaya)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	evm.TU.supercontig_84.89	T049804_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
OS08G0506700 M01755_2.00	Oryza sativa	NCCACTTGN	NCAAGTGGN	PBM Weirauch et al.(2014) pTH8547	0.902	0.961
BHLH122 M06724_2.00	Arabidopsis thaliana	NNDNCMACTTGNNH	DNNCAAGTKGNHNN	Dap-seq OMalley et al.(2016) bHLH122_col100_a	0.879	0.941
BHLH122 M06725_2.00	Arabidopsis thaliana	DNCMACTTGYN	NRCAAGTKGNH	Dap-seq OMalley et al.(2016) bHLH122_colamp_a	0.879	0.941
BHLH80 M06722_2.00	Arabidopsis thaliana	DNCMACTTGCH	DGCAAGTKGNH	Dap-seq OMalley et al.(2016) bHLH80_col_a	0.861	0.824
BHLH80 M06723_2.00	Arabidopsis thaliana	DKCMACTTGCA	TGCAAGTKGMH	Dap-seq OMalley et al.(2016) bHLH80_colamp_a	0.861	0.824
AT2G42280 M06733_2.00	Arabidopsis thaliana	DNCMACTTGYH	DRCAAGTKGNH	Dap-seq OMalley et al.(2016) bHLH130_col_a	0.856	0.961
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
evm.model.supercontig_84.89	bHLH	330	380	ATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQ

Links
Other bHLH family TFs
Other *Carica papaya* TFs