Pavir.Ba00676 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ba00676 T050673_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.867 0.961
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.844 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.844 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00676.1.p bHLH 304 354
Pavir.Ba00676.2.p bHLH 303 353

Links

Other bHLH family TFs
Other Panicum virgatum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF319 Tursiops truncatus ENSTTRG00000008426 N
ENSOARG00000001098 Ovis aries ENSOARG00000001098 N
ZNF319 Otolemur garnettii ENSOGAG00000003269 N
ENSPANG00000015991 Papio anubis ENSPANG00000015991 N
ENSPSIG00000004303 Pelodiscus sinensis ENSPSIG00000004303 N
ZNF319 Pteropus vampyrus ENSPVAG00000004612 N
Zfp319 Rattus norvegicus ENSRNOG00000013460 N
ENSSTOG00000019944 Ictidomys tridecemlineatus ENSSTOG00000019944 N
ZNF319 Taeniopygia guttata ENSTGUG00000004796 N
ENSNLEG00000003339 Nomascus leucogenys ENSNLEG00000003339 N
Aan_R013485 Calypte anna Aan_R013485 N
Afo_R001817 Aptenodytes forsteri Afo_R001817 N
Cmyd_10003977 Chelonia mydas Cmyd_10003977 N
ENSP00000299237-D1 Bos grunniens ENSP00000299237-D1 N
ENSP00000299237 Macaca fascicularis ENSP00000299237 N
Gfo_R016059 Geospiza fortis Gfo_R016059 N
Pvit_06816 Pogona vitticeps Pvit_06816 N
Tal_R002390 Tyto alba Tal_R002390 N
ENSFALG00000014292 Ficedula albicollis ENSFALG00000014292 N
ENSAMEG00000017202 Ailuropoda melanoleuca ENSAMEG00000017202 N
ENSAPLG00000002277 Anas platyrhynchos ENSAPLG00000002277 N
ZNF319 Bos taurus ENSBTAG00000045572 N
ZNF319 Canis familiaris ENSCAFG00000008559 N
ZNF319 Callithrix jacchus ENSCJAG00000022826 N
ENSCSAG00000018864 Chlorocebus sabaeus ENSCSAG00000018864 N
ZNF319 Dasypus novemcinctus ENSDNOG00000042239 N
ENSDORG00000001887 Dipodomys ordii ENSDORG00000001887 N
ZNF319 Anolis carolinensis ENSACAG00000026479 N
ZNF319 Felis catus ENSFCAG00000024689 N
ZNF319 Homo sapiens ENSG00000166188 N
ZNF319 Gallus gallus ENSGALG00000000999 N
ZNF319 Gorilla gorilla ENSGGOG00000017145 N
ZNF319 Loxodonta africana ENSLAFG00000002266 N
ZNF319 Microcebus murinus ENSMICG00000004897 N
ENSMPUG00000004675 Mustela putorius furo ENSMPUG00000004675 N
Zfp319 Mus musculus ENSMUSG00000046556 N