tcf3 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-478265 T051780_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.858 0.808
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.858 0.808
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.858 0.808
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.858 0.808
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.858 0.808
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.858 0.808
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.858 0.808
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.858 0.808
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.855 0.827
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.855 0.827
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.855 0.827
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.855 0.769
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.855 0.769
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.855 0.769
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.855 0.769
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.855 0.769
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.855 0.769
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.855 0.769
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.855 0.769
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.855 0.769
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.855 0.769
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.855 0.769
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.855 0.769
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.855 0.769
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.855 0.769
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI36071 bHLH 553 606

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TFAP4 Homo sapiens ENSG00000090447 D 0.000
Tfap4 Mus musculus ENSMUSG00000005718 D 0.000
crp Drosophila melanogaster FBgn0001994 D 0.000
ACYPI003006 Acyrthosiphon pisum ACYPI003006 I 0.000
AGAP010201 Anopheles gambiae AGAP010201 I 0.000
BGIBMGA010353 Bombyx mori BGIBMGA010353 I 0.000
CapteG45346 Capitella teleta CapteG45346 I 0.000
CGI_10026909 Crassostrea gigas CGI_10026909 I 0.000
TFAP4 Anolis carolinensis ENSACAG00000016352 I 0.000
ENSAMEG00000002016 Ailuropoda melanoleuca ENSAMEG00000002016 I 0.000
ENSAPLG00000013446 Anas platyrhynchos ENSAPLG00000013446 I 0.000
TFAP4 Bos taurus ENSBTAG00000033174 I 0.000
TFAP4 Canis familiaris ENSCAFG00000019231 I 0.000
ENSCING00000014406 Ciona intestinalis ENSCING00000014406 I 0.000
TFAP4 Callithrix jacchus ENSCJAG00000019756 I 0.000
TFAP4 Cavia porcellus ENSCPOG00000004174 I 0.000
ENSCSAG00000009620 Chlorocebus sabaeus ENSCSAG00000009620 I 0.000
ENSCSAVG00000000333 Ciona savignyi ENSCSAVG00000000333 I 0.000
tfap4 Danio rerio ENSDARG00000103923 I 0.000
TFAP4 Dasypus novemcinctus ENSDNOG00000039193 I 0.000
Tfap4 Dipodomys ordii ENSDORG00000004656 I 0.000
TFAP4 Equus caballus ENSECAG00000022311 I 0.000
TFAP4 Erinaceus europaeus ENSEEUG00000006004 I 0.000
TFAP4 Echinops telfairi ENSETEG00000008634 I 0.000
ENSFALG00000004331 Ficedula albicollis ENSFALG00000004331 I 0.000
TFAP4 Felis catus ENSFCAG00000011227 I 0.000
tfap4 Gasterosteus aculeatus ENSGACG00000011329 I 0.000
tfap4 Gasterosteus aculeatus ENSGACG00000018768 I 0.000
ENSGALG00000027823 Gallus gallus ENSGALG00000027823 I 0.000
TFAP4 Gorilla gorilla ENSGGOG00000000451 I 0.000
ENSGMOG00000014930 Gadus morhua ENSGMOG00000014930 I 0.000
ENSGMOG00000015232 Gadus morhua ENSGMOG00000015232 I 0.000
ENSLACG00000000328 Latimeria chalumnae ENSLACG00000000328 I 0.000
TFAP4 Loxodonta africana ENSLAFG00000022341 I 0.000
ENSLOCG00000002626 Lepisosteus oculatus ENSLOCG00000002626 I 0.000
ENSMEUG00000000888 Macropus eugenii ENSMEUG00000000888 I 0.000
TFAP4 Meleagris gallopavo ENSMGAG00000009411 I 0.000
TFAP4 Myotis lucifugus ENSMLUG00000005725 I 0.000
TFAP4 Monodelphis domestica ENSMODG00000016377 I 0.000
ENSMPUG00000015023 Mustela putorius furo ENSMPUG00000015023 I 0.000
TFAP4 Ornithorhynchus anatinus ENSOANG00000019858 I 0.000
ENSOARG00000003120 Ovis aries ENSOARG00000003120 I 0.000
TFAP4 Oryctolagus cuniculus ENSOCUG00000024550 I 0.000
TFAP4 Otolemur garnettii ENSOGAG00000008955 I 0.000
ENSONIG00000005196 Oreochromis niloticus ENSONIG00000005196 I 0.000
ENSONIG00000016338 Oreochromis niloticus ENSONIG00000016338 I 0.000
ENSOPRG00000001061 Ochotona princeps ENSOPRG00000001061 I 0.000
tfap4 Oryzias latipes ENSORLG00000008286 I 0.000
tfap4 Oryzias latipes ENSORLG00000015050 I 0.000
ENSPANG00000010499 Papio anubis ENSPANG00000010499 I 0.000
TFAP4 Procavia capensis ENSPCAG00000011134 I 0.000
ENSPFOG00000000836 Poecilia formosa ENSPFOG00000000836 I 0.000
ENSPFOG00000011355 Poecilia formosa ENSPFOG00000011355 I 0.000
ENSPPYG00000007054 Pongo abelii ENSPPYG00000007054 I 0.000
ENSPSIG00000009002 Pelodiscus sinensis ENSPSIG00000009002 I 0.000
TFAP4 Pan troglodytes ENSPTRG00000007713 I 0.000
ENSPVAG00000005418 Pteropus vampyrus ENSPVAG00000005418 I 0.000
Tfap4 Rattus norvegicus ENSRNOG00000005227 I 0.000
ENSSHAG00000011487 Sarcophilus harrisii ENSSHAG00000011487 I 0.000
ENSSTOG00000028040 Ictidomys tridecemlineatus ENSSTOG00000028040 I 0.000
TFAP4 Tupaia belangeri ENSTBEG00000014089 I 0.000
tfap4 Tetraodon nigroviridis ENSTNIG00000002015 I 0.000
tfap4 Tetraodon nigroviridis ENSTNIG00000009740 I 0.000
tfap4 Tetraodon nigroviridis ENSTNIG00000014095 I 0.000
tfap4 Takifugu rubripes ENSTRUG00000006111 I 0.000
tfap4 Takifugu rubripes ENSTRUG00000013344 I 0.000
TFAP4 Tursiops truncatus ENSTTRG00000002710 I 0.000
TFAP4 Vicugna pacos ENSVPAG00000008001 I 0.000
ENSXMAG00000004632 Xiphophorus maculatus ENSXMAG00000004632 I 0.000
ENSXMAG00000011968 Xiphophorus maculatus ENSXMAG00000011968 I 0.000
GA20511 Drosophila pseudoobscura FBgn0080505 I 0.000
GF21721 Drosophila ananassae FBgn0098721 I 0.000
GG24179 Drosophila erecta FBgn0116312 I 0.000
GH10096 Drosophila grimshawi FBgn0117577 I 0.000
GI14377 Drosophila mojavensis FBgn0137129 I 0.000
GL14101 Drosophila persimilis FBgn0151706 I 0.000
GM17917 Drosophila sechellia FBgn0172824 I 0.000
GD21926 Drosophila simulans FBgn0193342 I 0.000
GJ16254 Drosophila virilis FBgn0203439 I 0.000
GK24289 Drosophila willistoni FBgn0226250 I 0.000
GE19372 Drosophila yakuba FBgn0236717 I 0.000
GB48999 Apis mellifera GB48999 I 0.000
HMEL008759 Heliconius melpomene HMEL008759 I 0.000
KGM_15765 Danaus plexippus KGM_15765 I 0.000
L798_07621 Zootermopsis nevadensis L798_07621 I 0.000
SPU_003179 Strongylocentrotus purpuratus SPU_003179 I 0.000
tetur30g00270 Tetranychus urticae tetur30g00270 I 0.000
Aan_R014038 Calypte anna Aan_R014038 I 0.000
Afo_R007145 Aptenodytes forsteri Afo_R007145 I 0.000
Alligator_sinensis_CCG004455.1 Alligator sinensis Alligator_sinensis_CCG004455.1 I 0.000
Cmyd_10017689 Chelonia mydas Cmyd_10017689 I 0.000
ENSP00000204517-D1 Bos grunniens ENSP00000204517-D1 I 0.000
ENSP00000204517 Macaca fascicularis ENSP00000204517 I 0.000
Myotis_brandtii_TFAP4_10028039 Myotis brandtii Myotis_brandtii_TFAP4_10028039 I 0.000
Ogr05167 Ophisaurus gracilis Ogr05167 I 0.000
Pvit_18996 Pogona vitticeps Pvit_18996 I 0.000
estExt_fgenesh2_pg.C_3260041 Branchiostoma floridae estExt_fgenesh2_pg.C_3260041 I 0.000
fgenesh2_pg.scaffold_326000054 Branchiostoma floridae fgenesh2_pg.scaffold_326000054 I 0.000
Sakowv30040946m.g Saccoglossus kowalevskii Sakowv30040946m.g I 0.000
tfap4 Xenopus tropicalis XB-GENE-999265 I 0.000
LLOJ009485 Lutzomyia longipalpis LLOJ009485 I 0.000
MDOA012071 Musca domestica MDOA012071 I 0.000
TCLT_0000678201 Thelazia callipaeda TCLT_0000678201 I 0.000