CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

clock.L *(Xenopus laevis)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	XB-GENE-6254406	T051860_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Clock M01735_2.00	Mus musculus	NNCAYRTGNN	NNCAYRTGNN	PBM Weirauch et al.(2014) pTH5056	0.881	0.882
CLOCK M02789_2.00	Homo sapiens	DACACGTGYH	DRCACGTGTH	SELEX Jolma et al.(2013) CLOCK_1	0.881	0.882
CLOCK M04129_2.00	Homo sapiens	NMCACGTGYN	NRCACGTGKN	SELEX Yin et al.(2017) CLOCK_eDBD_HT-SELEX	0.881	0.882
CLOCK M08728_2.00	Homo sapiens	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_HUMAN.H11MO.0.C	0.881	0.882
Clock M08760_2.00	Mus musculus	DBBBCAYKTGNNHB	VDNNCAMRTGVVVH	Misc Kulakovskiy et al.(2013) CLOCK_MOUSE.H11MO.0.C	0.881	0.882
Clock M09473_2.00	Mus musculus	CACGTGNN	NNCACGTG	Misc Heinz et al.(2010) Liver-Clock_GSE39860	0.881	0.882
CLOCK M09849_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CLOCK_Q6	0.881	0.882
CLOCK M04130_2.00	Homo sapiens	NRCRCRTGBH	DVCAYGYGYN	SELEX Yin et al.(2017) CLOCK_eDBD_Methyl-HT-SELEX	0.881	0.882
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AAF12827	bHLH	26	76	KRASRNKSEKRRRDQFNILIKELGSMLPGNARRMDKSTVLHKSIDYLRKHK
AAF34772	bHLH	26	76	KRVSRNKSEKRRRDQFNILIKELGSMLPGNARRIDKSTVLQKSIDFLQKHK

Links
Other bHLH family TFs
Other *Xenopus laevis* TFs