12538_YJR060W (Saccharomyces paradoxus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 12538_YJR060W T051974_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CBF1
M00374_2.00 		Saccharomyces cerevisiae
NCACGTGAY
RTCACGTGN		 PBM
Berger et al.(2006)
Cbf1 		0.893 0.980
CBF1
M01520_2.00 		Saccharomyces cerevisiae
CACGTGAYH
DRTCACGTG		 PBM
Zhu et al.(2009)
Cbf1 		0.893 0.980
CBF1
M07440_2.00 		Saccharomyces cerevisiae
TCACGTGH
DCACGTGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0281.1 		0.893 0.980
CBF1
M08485_2.00 		Saccharomyces cerevisiae
NCAYRTGN
NCAYRTGN		 Misc
DeBoer et al.(2011)
YJR060W_1347 		0.893 0.980
CBF1
M09483_2.00 		Saccharomyces cerevisiae
KCACGTGAYN
NRTCACGTGM		 Misc
Heinz et al.(2010)
Yeast-Cbf1_GSE29506 		0.893 0.980
CBF1
M09897_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_02 		0.893 0.980
CBF1
M09898_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_03 		0.893 0.980
CBF1
M09899_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_04 		0.893 0.980
CBF1
M09900_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_B 		0.893 0.980
CBF1
M09901_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$CBF1_Q6 		0.893 0.980
CBF1
M00010_2.00 		Saccharomyces cerevisiae
NDCACGTGANN
NNTCACGTGHN		 PBM
Badis et al.(2008)
CBF1_2160 		0.882 0.959
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
12538_YJR060W bHLH 221 269

Links

Other bHLH family TFs
Other Saccharomyces paradoxus TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RO3G_07535 Rhizopus oryzae RO3G_07535 N
GLOINDRAFT_57229 Rhizophagus irregularis GLOINDRAFT_57229 N
e_gw1.4.509.1 Phycomyces blakesleeanus e_gw1.4.509.1 N
estExt_fgeneshPB_pg.C_170215 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_170215 N
estExt_Genewise1Plus.C_50512 Mucor circinelloides estExt_Genewise1Plus.C_50512 N
fgeneshMC_pg.2_#_314 Mucor circinelloides fgeneshMC_pg.2_#_314 N
gw1.3.1195.1 Mucor circinelloides gw1.3.1195.1 N