Gfo_R001453 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R001453 T070203_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Creb1
M00992_2.00 		Mus musculus
NNTGACGTCV
BGACGTCANN		 PBM
Mann et al.(2013)
CREB1_UM_HK 		0.883 0.983
Creb1
M01806_2.00 		Mus musculus
VTKACGHNN
NNDCGTMAB		 PBM
Weirauch et al.(2014)
pTH5080 		0.883 0.983
CREB1
M04264_2.00 		Homo sapiens
NVTKACGTMABN
NVTKACGTMABN		 SELEX
Yin et al.(2017)
CREB1_FL_HT-SELEX 		0.883 0.983
CREB1
M04258_2.00 		Homo sapiens
NVTKACGTMANN
NNTKACGTMABN		 SELEX
Yin et al.(2017)
CREB1_eDBD_HT-SELEX_1 		0.883 0.983
CREB1
M04259_2.00 		Homo sapiens
NRTGACGTR
YACGTCAYN		 SELEX
Yin et al.(2017)
CREB1_eDBD_HT-SELEX_2 		0.883 0.983
CREB1
M04260_2.00 		Homo sapiens
VTSACRYGWBAY
RTVWCRYGTSAB		 SELEX
Yin et al.(2017)
CREB1_eDBD_HT-SELEX_3 		0.883 0.983
CREB1
M04022_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Rodriguez-Martinez et al.(2017)
CREB1.1 		0.883 0.983
CREB1
M04023_2.00 		Homo sapiens
RTGACGTADB
VHTACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
CREB1.2 		0.883 0.983
CREB1
M08066_2.00 		Homo sapiens
NVTGACGTCABN
NVTGACGTCABN		 ChIP-seq
Mathelier et al.(2014)
MA0018.3 		0.883 0.983
CREB1
M08791_2.00 		Homo sapiens
WKRCGTCAYYN
NRRTGACGYMW		 Misc
Kulakovskiy et al.(2013)
CREB1_HUMAN.H11MO.0.A 		0.883 0.983
Creb1
M08824_2.00 		Mus musculus
WKRCGTCAYYN
NRRTGACGYMW		 Misc
Kulakovskiy et al.(2013)
CREB1_MOUSE.H11MO.0.A 		0.883 0.983
CREB1
M09948_2.00 		Homo sapiens
TGACGTMW
WKACGTCA		 Transfac
Matys et al.(2006)
V$CREB_01 		0.883 0.983
CREB1
M09949_2.00 		Homo sapiens
BBGDTGACGYVV
BBRCGTCAHCVV		 Transfac
Matys et al.(2006)
V$CREB_02 		0.883 0.983
CREB1
M09950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CREB1_Q3 		0.883 0.983
CREB1
M09951_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CREB1_Q6 		0.883 0.983
CREB1
M09952_2.00 		Homo sapiens
BSTGACGYARNN
NNYTRCGTCASV		 Transfac
Matys et al.(2006)
V$CREB_Q2 		0.883 0.983
CREB1
M09953_2.00 		Homo sapiens
BSTGACGYMRBV
BVYKRCGTCASV		 Transfac
Matys et al.(2006)
V$CREB_Q4 		0.883 0.983
CREB1
M09954_2.00 		Homo sapiens
KKGGGKTGACGYMND
HNKRCGTCAMCCCMM		 Transfac
Matys et al.(2006)
V$TAXCREB_01 		0.883 0.983
CREB1
M09955_2.00 		Homo sapiens
RTGACGCATAYCCCC
GGGGRTATGCGTCAY		 Transfac
Matys et al.(2006)
V$TAXCREB_02 		0.883 0.983
Creb1
M00991_2.00 		Mus musculus
NNRTGACGYVN
NBRCGTCAYNN		 PBM
Mann et al.(2013)
CREB1_M_HK 		0.883 0.983
CREB1
M04265_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
CREB1_FL_Methyl-HT-SELEX 		0.883 0.983
CREB1
M04261_2.00 		Homo sapiens
BRTGAYGYGND
HNCRCRTCAYV		 SELEX
Yin et al.(2017)
CREB1_eDBD_Methyl-HT-SELEX_1 		0.883 0.983
CREB1
M04262_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
CREB1_eDBD_Methyl-HT-SELEX_2 		0.883 0.983
CREB1
M04263_2.00 		Homo sapiens
NRTGACGYV
BRCGTCAYN		 SELEX
Yin et al.(2017)
CREB1_eDBD_Methyl-HT-SELEX_3 		0.883 0.983
ATF1
M08792_2.00 		Homo sapiens
HBRCGTCAYHN
NDRTGACGYVD		 Misc
Kulakovskiy et al.(2013)
ATF1_HUMAN.H11MO.0.B 		0.873 0.850
ATF1
M09485_2.00 		Homo sapiens
NVTGACGTMA
TKACGTCABN		 Misc
Heinz et al.(2010)
K562-ATF1_GSE31477 		0.873 0.850
ATF1
M09956_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF1_Q3 		0.873 0.850
ATF1
M09957_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF1_Q6_01 		0.873 0.850
ATF1
M09958_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ATF1_Q6 		0.873 0.850
Atf1
M00124_2.00 		Mus musculus
NNNNDNDNNN
NNNHNHNNNN		 PBM
Badis et al.(2009)
Atf1_3026 		0.862 0.850
Atf1
M01804_2.00 		Mus musculus
RTGACGTV
BACGTCAY		 PBM
Weirauch et al.(2014)
pTH5005 		0.862 0.850
Atf1
M08820_2.00 		Mus musculus
VTGACGTSAV
BTSACGTCAB		 Misc
Kulakovskiy et al.(2013)
ATF1_MOUSE.H11MO.0.B 		0.862 0.850
Crem
M01821_2.00 		Mus musculus
NRTKACGTMN
NKACGTMAYN		 PBM
Weirauch et al.(2014)
pTH5002 		0.861 0.933
Crem
M08845_2.00 		Mus musculus
SVVTGACGTSA
TSACGTCABBS		 Misc
Kulakovskiy et al.(2013)
CREM_MOUSE.H11MO.0.C 		0.861 0.933
CREM
M04229_2.00 		Homo sapiens
VVTBACGTVABN
NVTBACGTVABB		 SELEX
Yin et al.(2017)
CREM_eDBD_HT-SELEX 		0.830 0.750
CREM
M08784_2.00 		Homo sapiens
SVVTGACGTSA
TSACGTCABBS		 Misc
Kulakovskiy et al.(2013)
CREM_HUMAN.H11MO.0.C 		0.830 0.750
CREM
M09930_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CREM_Q6_01 		0.830 0.750
CREM
M09931_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CREM_Q6 		0.830 0.750
CREM
M04230_2.00 		Homo sapiens
NRTGACRTCAYN
NRTGAYGTCAYN		 SELEX
Yin et al.(2017)
CREM_eDBD_Methyl-HT-SELEX 		0.830 0.750
CrebB-17A
M03659_2.00 		Drosophila melanogaster
RTGACGTCAY
RTGACGTCAY		 SELEX
Nitta et al.(2015)
CrebB-17A_1 		0.798 0.783
CrebB-17A
M03660_2.00 		Drosophila melanogaster
RTGACGTCAY
RTGACGTCAY		 SELEX
Nitta et al.(2015)
CrebB-17A_2 		0.798 0.783
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R001453 bZIP 290 349

Links

Other bZIP family TFs
Other Geospiza fortis TFs

357 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000020233 Astyanax mexicanus ENSAMXG00000020233 I
ENSPFOG00000016287 Poecilia formosa ENSPFOG00000016287 I
arntl2 Oryzias latipes ENSORLG00000010946 I
arntl2 Danio rerio ENSDARG00000041381 I
ENSONIG00000014665 Oreochromis niloticus ENSONIG00000014665 I
arntl2 Tetraodon nigroviridis ENSTNIG00000012142 I
arntl2 Takifugu rubripes ENSTRUG00000007832 I
ENSXMAG00000001482 Xiphophorus maculatus ENSXMAG00000001482 I
ENSPSIG00000009416 Pelodiscus sinensis ENSPSIG00000009416 N
ARNTL2 Procavia capensis ENSPCAG00000008486 N
ARNTL2 Pan troglodytes ENSPTRG00000004788 N
ARNTL2 Pteropus vampyrus ENSPVAG00000013771 N
ARNTL2 Sus scrofa ENSSSCG00000000551 N
ENSSTOG00000001344 Ictidomys tridecemlineatus ENSSTOG00000001344 N
ENSTGUG00000012163 Taeniopygia guttata ENSTGUG00000012163 N
ENSTSYG00000005541 Tarsius syrichta ENSTSYG00000005541 N
ARNTL2 Tursiops truncatus ENSTTRG00000012339 N
Aan_R007949 Calypte anna Aan_R007949 N
Afo_R006305 Aptenodytes forsteri Afo_R006305 N
Brh_R011091 Buceros rhinoceros Brh_R011091 N
Cmyd_10013756 Chelonia mydas Cmyd_10013756 N
ENSP00000266503-D1 Bos grunniens ENSP00000266503-D1 N
ENSP00000266503 Macaca fascicularis ENSP00000266503 N
Gfo_R015185 Geospiza fortis Gfo_R015185 N
Myotis_brandtii_ARNTL2_10027352 Myotis brandtii Myotis_brandtii_ARNTL2_10027352 N
Ogr07520 Ophisaurus gracilis Ogr07520 N
Pvit_19389 Pogona vitticeps Pvit_19389 N
Tal_R011603 Tyto alba Tal_R011603 N
ENSLOCG00000015224 Lepisosteus oculatus ENSLOCG00000015224 N
ENSAMEG00000011610 Ailuropoda melanoleuca ENSAMEG00000011610 N
ENSAPLG00000008758 Anas platyrhynchos ENSAPLG00000008758 N
ARNTL2 Bos taurus ENSBTAG00000011804 N
ARNTL2 Canis familiaris ENSCAFG00000011089 N
ENSCSAG00000007636 Chlorocebus sabaeus ENSCSAG00000007636 N
ENSFALG00000003942 Ficedula albicollis ENSFALG00000003942 N
ARNTL2 Felis catus ENSFCAG00000000386 N
ARNTL2 Homo sapiens ENSG00000029153 N
ARNTL2 Gallus gallus ENSGALG00000014096 N
ENSLACG00000009646 Latimeria chalumnae ENSLACG00000009646 N
ENSPPYG00000004380 Pongo abelii ENSPPYG00000004380 N
ENSMEUG00000007045 Macropus eugenii ENSMEUG00000007045 N
ARNTL2 Meleagris gallopavo ENSMGAG00000013735 N
ARNTL2 Myotis lucifugus ENSMLUG00000003256 N
ARNTL2 Macaca mulatta ENSMMUG00000023249 N
ENSMPUG00000010512 Mustela putorius furo ENSMPUG00000010512 N
ENSNLEG00000005463 Nomascus leucogenys ENSNLEG00000005463 N
ENSOARG00000019779 Ovis aries ENSOARG00000019779 N
ARNTL2 Otolemur garnettii ENSOGAG00000011668 N
ENSPANG00000004474 Papio anubis ENSPANG00000004474 N
ARNTL2 Anolis carolinensis ENSACAG00000012446 N