Gfo_R012350 (Geospiza fortis)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Gfo_R012350 T070222_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATF6
M04254_2.00 		Homo sapiens
YKRTGACGTGGCAN
NTGCCACGTCAYMR		 SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_1 		0.866 0.889
ATF6
M04255_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF6_eDBD_HT-SELEX_2 		0.866 0.889
ATF6
M04018_2.00 		Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.1 		0.866 0.889
ATF6
M04019_2.00 		Homo sapiens
KAGTCACGTGK
MCACGTGACTM		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.2 		0.866 0.889
ATF6
M04020_2.00 		Homo sapiens
BNRTGACGTCATCA
TGATGACGTCAYNV		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.3 		0.866 0.889
ATF6
M04021_2.00 		Homo sapiens
ACCACGATGTY
RACATCGTGGT		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6.4 		0.866 0.889
ATF6
M08790_2.00 		Homo sapiens
VBSSTGACGTGG
CCACGTCASSVB		 Misc
Kulakovskiy et al.(2013)
ATF6A_HUMAN.H11MO.0.B 		0.866 0.889
ATF6
M09947_2.00 		Homo sapiens
TGACGTGG
CCACGTCA		 Transfac
Matys et al.(2006)
V$ATF6_01 		0.866 0.889
ATF6
M04256_2.00 		Homo sapiens
YGRTGACGTGGCRN
NYGCCACGTCAYCR		 SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_1 		0.866 0.889
ATF6
M04257_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF6_eDBD_Methyl-HT-SELEX_2 		0.866 0.889
ATF6B
M04375_2.00 		Homo sapiens
NRTGACGTCAYN
NRTGACGTCAYN		 SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_1 		0.817 0.603
ATF6B
M04376_2.00 		Homo sapiens
NRTGACGTGGCR
YGCCACGTCAYN		 SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_2 		0.817 0.603
ATF6B
M04377_2.00 		Homo sapiens
TGCCACGTGGCR
YGCCACGTGGCA		 SELEX
Yin et al.(2017)
ATF6B_eDBD_HT-SELEX_3 		0.817 0.603
ATF6B
M04041_2.00 		Homo sapiens
GRTGACGTGGCR
YGCCACGTCAYC		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.1 		0.817 0.603
ATF6B
M04042_2.00 		Homo sapiens
YGMCACGTGKCR
YGMCACGTGKCR		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.2 		0.817 0.603
ATF6B
M04043_2.00 		Homo sapiens
RTGACGTCAYC
GRTGACGTCAY		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.3 		0.817 0.603
ATF6B
M04044_2.00 		Homo sapiens
MCCACGATGT
ACATCGTGGK		 SELEX
Rodriguez-Martinez et al.(2017)
ATF6B.4 		0.817 0.603
ATF6B
M04378_2.00 		Homo sapiens
SRTGACGTCAYB
VRTGACGTCAYS		 SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_1 		0.817 0.603
ATF6B
M04379_2.00 		Homo sapiens
BRTGACGTGGCR
YGCCACGTCAYV		 SELEX
Yin et al.(2017)
ATF6B_eDBD_Methyl-HT-SELEX_2 		0.817 0.603
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012350 bZIP 253 318

Links

Other bZIP family TFs
Other Geospiza fortis TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSSCG00000000417 Sus scrofa ENSSSCG00000000417 N
ENSOARG00000017907 Ovis aries ENSOARG00000017907 N
ZBTB39 Oryctolagus cuniculus ENSOCUG00000002811 N
ZBTB39 Otolemur garnettii ENSOGAG00000001098 N
ZBTB39 Ochotona princeps ENSOPRG00000013298 N
ENSPANG00000012176 Papio anubis ENSPANG00000012176 N
ENSPSIG00000002017 Pelodiscus sinensis ENSPSIG00000002017 N
ZBTB39 Pan troglodytes ENSPTRG00000005116 N
Zbtb39 Rattus norvegicus ENSRNOG00000004306 N
ENSSHAG00000004614 Sarcophilus harrisii ENSSHAG00000004614 N
ENSNLEG00000019268 Nomascus leucogenys ENSNLEG00000019268 N
ENSSTOG00000012284 Ictidomys tridecemlineatus ENSSTOG00000012284 N
ZBTB39 Tupaia belangeri ENSTBEG00000013206 N
Aan_R000717 Calypte anna Aan_R000717 N
Afo_R009811 Aptenodytes forsteri Afo_R009811 N
Alligator_sinensis_CCG009328.1 Alligator sinensis Alligator_sinensis_CCG009328.1 N
ENSP00000300101-D1 Bos grunniens ENSP00000300101-D1 N
ENSP00000300101 Macaca fascicularis ENSP00000300101 N
Myotis_brandtii_ZBTB39_10018362 Myotis brandtii Myotis_brandtii_ZBTB39_10018362 N
Pvit_05428 Pogona vitticeps Pvit_05428 N
ZBTB39 Homo sapiens ENSG00000166860 N
ENSAPLG00000008875 Anas platyrhynchos ENSAPLG00000008875 N
ZBTB39 Bos taurus ENSBTAG00000038498 N
ZBTB39 Choloepus hoffmanni ENSCHOG00000000030 N
ZBTB39 Callithrix jacchus ENSCJAG00000010622 N
ENSCPOG00000012923 Cavia porcellus ENSCPOG00000012923 N
ENSCSAG00000018897 Chlorocebus sabaeus ENSCSAG00000018897 N
ZBTB39 Dasypus novemcinctus ENSDNOG00000011215 N
ZBTB39 Echinops telfairi ENSETEG00000019060 N
ZBTB39 Felis catus ENSFCAG00000005613 N
ZBTB39 Anolis carolinensis ENSACAG00000007359 N
ZBTB39 Gorilla gorilla ENSGGOG00000024480 N
ZBTB39 Loxodonta africana ENSLAFG00000004913 N
ENSMEUG00000005179 Macropus eugenii ENSMEUG00000005179 N
ENSMICG00000011565 Microcebus murinus ENSMICG00000011565 N
ZBTB39 Myotis lucifugus ENSMLUG00000000390 N
ZBTB39 Macaca mulatta ENSMMUG00000021115 N
ZBTB39 Monodelphis domestica ENSMODG00000022759 N
Zbtb39 Mus musculus ENSMUSG00000044617 N