CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

estExt_fgenesh2_pg.C_1140009 *(Branchiostoma floridae)* bZIP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00170 (bZIP_1)	IPR011616	estExt_fgenesh2_pg.C_1140009	T070827_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
jund M01842_2.00	Xenopus tropicalis	NTGACDCAH	DTGHGTCAN	PBM Weirauch et al.(2014) pTH8562	0.884	0.875
Jund M01001_2.00	Mus musculus	NTGACKYAH	DTRMGTCAN	PBM Mann et al.(2013) JUND_UM_HK	0.882	0.828
Jund M01822_2.00	Mus musculus	RTGACKCAH	DTGMGTCAY	PBM Weirauch et al.(2014) pTH5462	0.882	0.828
JUND M04281_2.00	Homo sapiens	NRTGACGCAYN	NRTGCGTCAYN	SELEX Yin et al.(2017) JUND_eDBD_HT-SELEX_1	0.882	0.828
JUND M04282_2.00	Homo sapiens	BRTKACGTCAYS	SRTGACGTMAYV	SELEX Yin et al.(2017) JUND_eDBD_HT-SELEX_2	0.882	0.828
JUND M05836_2.00	Homo sapiens	RTGACKCAYH	DRTGMGTCAY	SMiLE-seq Isakova et al.(2017) JUND_primary	0.882	0.828
JUND M05837_2.00	Homo sapiens	NNTKACGTCAB	VTGACGTMANN	SMiLE-seq Isakova et al.(2017) JUND_secondary	0.882	0.828
JUND M08068_2.00	Homo sapiens	NDNRATGABGTMATN	NATKACVTCATYNHN	ChIP-seq Mathelier et al.(2014) MA0492.1	0.882	0.828
JUND M08067_2.00	Homo sapiens	DRTGASTCATN	NATGASTCAYH	ChIP-seq Mathelier et al.(2014) MA0491.1	0.882	0.828
JUND M07814_2.00	Homo sapiens	NNTGASTCATWHHDRDANH	DNTHYHDDWATGASTCANN	ChIP-seq Gerstein et al.(2012) GM12878_JUND_Stanford	0.882	0.828
JUND M07815_2.00	Homo sapiens	VTGASTCAYCN	NGRTGASTCAB	ChIP-seq Gerstein et al.(2012) H1-hESC_JUND_HudsonAlpha	0.882	0.828
JUND M07816_2.00	Homo sapiens	DGATGASTCAYNBHN	NDVNRTGASTCATCH	ChIP-seq Gerstein et al.(2012) HeLa-S3_JUND_Stanford	0.882	0.828
JUND M07817_2.00	Homo sapiens	VTGASTCAYYHHN	NDDRRTGASTCAB	ChIP-seq Gerstein et al.(2012) HepG2_JUND_HudsonAlpha	0.882	0.828
JUND M07818_2.00	Homo sapiens	BDRTGACKYMWBNNN	NNNVWKRMGTCAYHV	ChIP-seq Gerstein et al.(2012) HepG2_JUND_Stanford	0.882	0.828
JUND M07819_2.00	Homo sapiens	BVTGACGTCAYYNN	NNRRTGACGTCABV	ChIP-seq Gerstein et al.(2012) K562_JUND_Stanford	0.882	0.828
JUND M07820_2.00	Homo sapiens	NGRTGASTCAYNBBB	VVVNRTGASTCAYCN	ChIP-seq Gerstein et al.(2012) K562_JUND_UChicago	0.882	0.828
JUND M08797_2.00	Homo sapiens	NRTGACTCABN	NVTGAGTCAYN	Misc Kulakovskiy et al.(2013) JUND_HUMAN.H11MO.0.A	0.882	0.828
Jund M08846_2.00	Mus musculus	RTGACTCABNN	NNVTGAGTCAY	Misc Kulakovskiy et al.(2013) JUND_MOUSE.H11MO.0.A	0.882	0.828
JUND M09487_2.00	Homo sapiens	RTGACGTCAYNN	NNRTGACGTCAY	Misc Heinz et al.(2010) K562-JunD	0.882	0.828
JUND M09966_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$JUND_01	0.882	0.828
JUND M09967_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$JUND_02	0.882	0.828
JUND M09968_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$JUND_Q6	0.882	0.828
Jund M01000_2.00	Mus musculus	NRTGACTCAN	NTGAGTCAYN	PBM Mann et al.(2013) JUND_M_HK	0.882	0.828
JUND M04283_2.00	Homo sapiens	BATGASTCATB	VATGASTCATV	SELEX Yin et al.(2017) JUND_eDBD_Methyl-HT-SELEX_1	0.882	0.828
JUND M04284_2.00	Homo sapiens	BRTGACDCATV	BATGHGTCAYV	SELEX Yin et al.(2017) JUND_eDBD_Methyl-HT-SELEX_2	0.882	0.828
Jun M00995_2.00	Mus musculus	NTGACKYMH	DKRMGTCAN	PBM Mann et al.(2013) JUN_UM_HK	0.871	0.812
Jun M01816_2.00	Mus musculus	NTKACKYAD	HTRMGTMAN	PBM Weirauch et al.(2014) pTH4337	0.871	0.812
JUN M04339_2.00	Homo sapiens	NATGACGTCAYN	NRTGACGTCATN	SELEX Yin et al.(2017) JUN_FL_HT-SELEX_1	0.871	0.812
JUN M04340_2.00	Homo sapiens	NRTGACKCAYN	NRTGMGTCAYN	SELEX Yin et al.(2017) JUN_FL_HT-SELEX_2	0.871	0.812
JUN M05841_2.00	Homo sapiens	NATGACKCATN	NATGMGTCATN	SMiLE-seq Isakova et al.(2017) JUN_primary	0.871	0.812
JUN M05842_2.00	Homo sapiens	NNNDATGACGTMAHNVN	NBNDTKACGTCATHNNN	SMiLE-seq Isakova et al.(2017) JUN_secondary	0.871	0.812
JUN M04037_2.00	Homo sapiens	RTGACKCAY	RTGMGTCAY	SELEX Rodriguez-Martinez et al.(2017) JUN.1	0.871	0.812
JUN M04038_2.00	Homo sapiens	RTGACGTCAT	ATGACGTCAY	SELEX Rodriguez-Martinez et al.(2017) JUN.2	0.871	0.812
JUN M08072_2.00	Homo sapiens	ATKACMTCATHNN	NNDATGAKGTMAT	ChIP-seq Mathelier et al.(2014) MA0488.1	0.871	0.812
JUN M08073_2.00	Homo sapiens	DDDDDRTGASTCAB	VTGASTCAYHHHHH	ChIP-seq Mathelier et al.(2014) MA0489.1	0.871	0.812
JUN M07834_2.00	Homo sapiens	VATDSYHNNNNVVTGASKYM	KRMSTCABBNNNNDRSHATB	ChIP-seq Gerstein et al.(2012) H1-hESC_CJUN_Stanford	0.871	0.812
JUN M07835_2.00	Homo sapiens	DRTGACTCABN	NVTGAGTCAYH	ChIP-seq Gerstein et al.(2012) HeLa-S3_CJUN_Stanford	0.871	0.812
JUN M07836_2.00	Homo sapiens	NRTGACRTCAYYNNN	NNNRRTGAYGTCAYN	ChIP-seq Gerstein et al.(2012) HepG2_CJUN_Stanford	0.871	0.812
JUN M07837_2.00	Homo sapiens	NDRDDRRTGASTCAY	RTGASTCAYYHHYHN	ChIP-seq Gerstein et al.(2012) HUVEC_CJUN_Stanford	0.871	0.812
JUN M07838_2.00	Homo sapiens	NRTGACTCABN	NVTGAGTCAYN	ChIP-seq Gerstein et al.(2012) K562_CJUN_Stanford	0.871	0.812
JUN M08806_2.00	Homo sapiens	DRTGACTCABN	NVTGAGTCAYH	Misc Kulakovskiy et al.(2013) JUN_HUMAN.H11MO.0.A	0.871	0.812
Jun M08837_2.00	Mus musculus	VTGACTCABN	NVTGAGTCAB	Misc Kulakovskiy et al.(2013) JUN_MOUSE.H11MO.0.A	0.871	0.812
JUN M10004_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CJUN_Q6	0.871	0.812
JUN M04341_2.00	Homo sapiens	NATGACTCATN	NATGAGTCATN	SELEX Yin et al.(2017) JUN_FL_Methyl-HT-SELEX_1	0.871	0.812
JUN M04342_2.00	Homo sapiens	NATGASTCATN	NATGASTCATN	SELEX Yin et al.(2017) JUN_FL_Methyl-HT-SELEX_2	0.871	0.812
JUNB M04329_2.00	Homo sapiens	BRTGACGTCATN	NATGACGTCAYV	SELEX Yin et al.(2017) JUNB_eDBD_HT-SELEX	0.839	0.766
JUNB M05838_2.00	Homo sapiens	VTGACTCA	TGAGTCAB	SMiLE-seq Isakova et al.(2017) JUNB_primary	0.839	0.766
JUNB M05839_2.00	Homo sapiens	RTKACGTMAY	RTKACGTMAY	SMiLE-seq Isakova et al.(2017) JUNB_secondary	0.839	0.766
JUNB M08070_2.00	Homo sapiens	NRRTGASTCAB	VTGASTCAYYN	ChIP-seq Mathelier et al.(2014) MA0490.1	0.839	0.766
JUNB M07829_2.00	Homo sapiens	NDRTGASTCABNNNB	VNNNVTGASTCAYHN	ChIP-seq Gerstein et al.(2012) K562_JUNB_UChicago	0.839	0.766
JUNB M08803_2.00	Homo sapiens	NVTGACTCABH	DVTGAGTCABN	Misc Kulakovskiy et al.(2013) JUNB_HUMAN.H11MO.0.A	0.839	0.766
JUNB M09992_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$JUNB_Q6	0.839	0.766
JUNB M04330_2.00	Homo sapiens	BRTGASTCATV	BATGASTCAYV	SELEX Yin et al.(2017) JUNB_eDBD_Methyl-HT-SELEX	0.839	0.766
Junb M00760_2.00	Mus musculus	NNNNNNNN	NNNNNNNN	PBM Weirauch et al.(2013) pTH3064	0.839	0.750
Junb M08838_2.00	Mus musculus	VTGACTCAB	VTGAGTCAB	Misc Kulakovskiy et al.(2013) JUNB_MOUSE.H11MO.0.A	0.839	0.750
Jra M03636_2.00	Drosophila melanogaster	NRTGACGTCAYN	NRTGACGTCAYN	SELEX Nitta et al.(2015) Jra_1	0.813	0.656
Jra M06018_2.00	Drosophila melanogaster	DMTGASTCAYS	SRTGASTCAKH	B1H Zhu et al.(2011) kay_Jra_SANGER_5_FBgn0001291	0.813	0.656
For this family, TFs with SR scores > 0.782* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
estExt_fgenesh2_pg.C_1140009	bZIP	240	303	QELIKAERKRLRNRIAASKCRKRKLERISRLESKVKDLKTQNTDLSTTANQLREQVCQLKQKVM

Links
Other bZIP family TFs
Other *Branchiostoma floridae* TFs

232 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Pm001671	Prunus mume	Pm001671	N
SapurV1A.3860s0010	Salix purpurea	SapurV1A.3860s0010	N
SapurV1A.1951s0040	Salix purpurea	SapurV1A.1951s0040	N
SapurV1A.1066s0010	Salix purpurea	SapurV1A.1066s0010	N
SapurV1A.0977s0060	Salix purpurea	SapurV1A.0977s0060	N
orange1.1g025739m.g	Citrus sinensis	orange1.1g025739m.g	N
Gorai.013G266400	Gossypium raimondii	Gorai.013G266400	N
evm.TU.supercontig_34.221	Carica papaya	evm.TU.supercontig_34.221	N
Eucgr.J00637	Eucalyptus grandis	Eucgr.J00637	N
Ciclev10016383m.g	Citrus clementina	Ciclev10016383m.g	N
mgf016309m	Mimulus guttatus	mgf016309m	N
Cucsa.142580	Cucumis sativus	Cucsa.142580	N
30089.m001012	Ricinus communis	30089.m001012	N
GLYMA13G03880	Glycine max	GLYMA13G03880	N
Cla011265	Citrullus lanatus	Cla011265	N
Ca_10228	Cicer arietinum	Ca_10228	N
VIT_06s0009g01790	Vitis vinifera	VIT_06s0009g01790	N
TCM_042034	Theobroma cacao	TCM_042034	N
Solyc01g008980.2	Solanum lycopersicum	Solyc01g008980.2	N
PRUPE_ppa022266mg	Prunus persica	PRUPE_ppa022266mg	N
POPTR_0009s02360	Populus trichocarpa	POPTR_0009s02360	N
POPTR_0001s22790	Populus trichocarpa	POPTR_0001s22790	N
PGSC0003DMG400022706	Solanum tuberosum	PGSC0003DMG400022706	N
MTR_5g088230	Medicago truncatula	MTR_5g088230	N
GLYMA20G10600	Glycine max	GLYMA20G10600	N

estExt_fgenesh2_pg.C_1140009 (Branchiostoma floridae) bZIP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

232 Related TFs

estExt_fgenesh2_pg.C_1140009 **(Branchiostoma floridae)
bZIP**