CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ZKSCAN2
(
Loxodonta africana
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSLAFG00000007287
T076459_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.962
0.962
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.745
0.745
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.745
0.745
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.745
0.745
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000006125
MADF
363
425
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHVLEPCAFFEDMD
ENSLAFP00000006125
MADF
517
584
TRFYEALQACHRKSKLYGAVAEQLRECGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDAL
ENSLAFP00000006125
C2H2 ZF
777
799
YKCSVCGKSFGRSRSLIRHQRIH
ENSLAFP00000006125
C2H2 ZF
805
827
FKCFDCGKSFNDSSNFGAHQRIH
ENSLAFP00000006125
C2H2 ZF
833
855
YRCGECGKCFSQSSSLIIHQRTH
ENSLAFP00000006125
C2H2 ZF
861
883
YQCGECGKSFTNSSHFSTHRRVH
ENSLAFP00000006125
C2H2 ZF
889
911
YKCVDCEKSFNNCTRFREHQRTH
ENSLAFP00000006125
C2H2 ZF
917
939
YGCVQCGKRFNKSSVLTKHREVH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Loxodonta africana
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy