CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSSSCG00000004709
(
Sus scrofa
)
C2H2 ZF,MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
PF10545 (MADF_DNA_bdg)
IPR007087
IPR006578
ENSSSCG00000004709
T076494_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZSCAN29
M04384_2.00
Homo sapiens
MCGYRTARMCGKCTAYRCNN
NNGYRTAGMCGKYTAYRCGK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_HT-SELEX
0.981
0.981
ZSCAN29
M08271_2.00
Homo sapiens
YGTCTACRCNGN
NCNGYGTAGACR
ChIP-seq
Schmitges et al.(2016)
Q8IWY8_1-4.RCADE
0.981
0.981
ZSCAN29
M04385_2.00
Homo sapiens
MHGYRTAGMCGKCTACACNN
NNGTGTAGMCGKCTAYRCDK
SELEX
Yin et al.(2017)
ZSCAN29_eDBD_Methyl-HT-SELEX
0.981
0.981
ZKSCAN2
M07562_2.00
Homo sapiens
RRRRRMMAC
GTKTYYYYY
ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZKSCAN2.RCADE.ReprocessedData
0.731
0.731
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000005075
MADF
261
328
TEFYEALRNCHRNSQVYEAVAERLREYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPETCPFFEEMEAL
ENSSSCP00000005075
MADF
424
491
TQFYEALRNCHRNSQLYGAVAERLWEHGFLRTPEQCRTKFKSLQTSYRKVKNGQAPETCPFFEEMDAL
ENSSSCP00000005075
C2H2 ZF
674
696
YKCDDCGKSFSRSARLIRHRRIH
ENSSSCP00000005075
C2H2 ZF
702
724
YKCLDCGKSFRDSSNFITHRRIH
ENSSSCP00000005075
C2H2 ZF
730
752
YQCGECGKRFNQSSSLIIHQRTH
ENSSSCP00000005075
C2H2 ZF
758
780
YQCEECGKSFNNSSHFSAHRRIH
ENSSSCP00000005075
C2H2 ZF
786
808
HVCPDCGKSFSKSSDLRAHHRTH
ENSSSCP00000005075
C2H2 ZF
814
836
YGCHDCGKYFSKSSALNKHREIH
Links
Other
C2H2 ZF,MADF
family TFs
Other
Sus scrofa
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy