CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CpipJ_CPIJ008311 *(Culex pipiens)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	CpipJ_CPIJ008311	T077618_2.00	Broad (2016-May-1)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
hkb M03710_2.00	Drosophila melanogaster	VTCACGCCYHHN	NDDRGGCGTGAB	SELEX Nitta et al.(2015) hkb_1	0.800	0.928
hkb M06470_2.00	Drosophila melanogaster	TCACGCCYM	KRGGCGTGA	B1H Mathelier et al.(2014) MA0450.1	0.800	0.928
hkb M06168_2.00	Drosophila melanogaster	TCACGCCYM	KRGGCGTGA	B1H Zhu et al.(2011) hkb_NAR_FBgn0001204	0.800	0.928
hkb M09666_2.00	Drosophila melanogaster	YMACGCCCMY	RKGGGCGTKR	Misc Kulakovskiy et al.(2009) hkb	0.800	0.928
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CpipJ_CPIJ008311-RA	C2H2 ZF	163	185	FKCPHCDVAFSNNGQLKGHIRIH
CpipJ_CPIJ008311-RA	C2H2 ZF	191	215	FKCDEPTCGKTFTRNEELTRHKRIH
CpipJ_CPIJ008311-RA	C2H2 ZF	221	243	YACQTCGKKFGRRDHLKKHTKTH

Links
Other C2H2 ZF family TFs
Other *Culex pipiens* TFs