Bo3g017740 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo3g017740 T081724_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.803 0.935
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.717
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g017740.1 C2H2 ZF 36 58
Bo3g017740.1 C2H2 ZF 79 101

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPPYG00000004641 Pongo abelii ENSPPYG00000004641 I
ENSMPUG00000000964 Mustela putorius furo ENSMPUG00000000964 I
Ikzf4 Mus musculus ENSMUSG00000002578 I
ENSNLEG00000017564 Nomascus leucogenys ENSNLEG00000017564 I
ENSOARG00000010565 Ovis aries ENSOARG00000010565 I
IKZF4 Oryctolagus cuniculus ENSOCUG00000012558 I
IKZF4 Otolemur garnettii ENSOGAG00000034375 I
IKZF4 Ochotona princeps ENSOPRG00000007904 I
IKZF4 Procavia capensis ENSPCAG00000010641 I
ENSAMEG00000003228 Ailuropoda melanoleuca ENSAMEG00000003228 I
IKZF4 Pan troglodytes ENSPTRG00000005074 I
IKZF4 Pteropus vampyrus ENSPVAG00000007558 I
Ikzf4 Rattus norvegicus ENSRNOG00000005535 I
Myotis_brandtii_IKZF4_10009162 Myotis brandtii Myotis_brandtii_IKZF4_10009162 I
ENSSTOG00000010547 Ictidomys tridecemlineatus ENSSTOG00000010547 I
ENSP00000262032 Macaca fascicularis ENSP00000262032 I
Aan_R005612 Calypte anna Aan_R005612 I
ENSP00000262032-D1 Bos grunniens ENSP00000262032-D1 I
IKZF4 Erinaceus europaeus ENSEEUG00000006871 I
IKZF4 Canis familiaris ENSCAFG00000030801 I
IKZF4 Callithrix jacchus ENSCJAG00000006230 I
IKZF4 Cavia porcellus ENSCPOG00000009964 I
ENSCSAG00000005270 Chlorocebus sabaeus ENSCSAG00000005270 I
IKZF4 Dasypus novemcinctus ENSDNOG00000037824 I
Ikzf4 Dipodomys ordii ENSDORG00000015397 I
IKZF4 Bos taurus ENSBTAG00000012636 I
IKZF4 Equus caballus ENSECAG00000024175 I
IKZF4 Felis catus ENSFCAG00000029852 I
IKZF4 Homo sapiens ENSG00000123411 I
IKZF4 Gorilla gorilla ENSGGOG00000011558 I
IKZF4 Loxodonta africana ENSLAFG00000026742 I
ENSMGAG00000010066 Meleagris gallopavo ENSMGAG00000010066 I
IKZF4 Microcebus murinus ENSMICG00000011029 I
IKZF4 Myotis lucifugus ENSMLUG00000026014 I
IKZF4 Macaca mulatta ENSMMUG00000007523 I
ikzf4 Xenopus tropicalis XB-GENE-1219102 N
Ogr17485 Ophisaurus gracilis Ogr17485 N
Pvit_00621 Pogona vitticeps Pvit_00621 N
Cmyd_10003867 Chelonia mydas Cmyd_10003867 N
Alligator_sinensis_CCG000741.1 Alligator sinensis Alligator_sinensis_CCG000741.1 N
ENSXMAG00000001993 Xiphophorus maculatus ENSXMAG00000001993 N
ENSSHAG00000007337 Sarcophilus harrisii ENSSHAG00000007337 N
ENSPSIG00000003074 Pelodiscus sinensis ENSPSIG00000003074 N
IKZF4 Monodelphis domestica ENSMODG00000001780 N
ENSAPLG00000016341 Anas platyrhynchos ENSAPLG00000016341 N