Bo3g139880 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo3g139880 T081733_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.818 0.977
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.818 0.977
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo3g139880.1 C2H2 ZF 141 162
Bo3g139880.1 C2H2 ZF 161 188

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI12G20640 Oryza rufipogon ORUFI12G20640 N 0.000
OMERI12G13180 Oryza meridionalis OMERI12G13180 N 0.000
ONIVA07G09980 Oryza nivara ONIVA07G09980 N 0.000
ONIVA07G13650 Oryza nivara ONIVA07G13650 N 0.000
ONIVA12G17390 Oryza nivara ONIVA12G17390 N 0.000
OPUNC12G16690 Oryza punctata OPUNC12G16690 N 0.000
ORGLA07G0123600 Oryza glaberrima ORGLA07G0123600 N 0.000
ORGLA12G0157500 Oryza glaberrima ORGLA12G0157500 N 0.000
ORUFI07G15560 Oryza rufipogon ORUFI07G15560 N 0.000
OMERI09G11810 Oryza meridionalis OMERI09G11810 N 0.000
OS12G0610600 Oryza sativa OS12G0610600 N 0.000
Si014408m.g Setaria italica Si014408m.g N 0.000
Si030942m.g Setaria italica Si030942m.g N 0.000
Traes_5AS_E5FD82E36 Triticum aestivum Traes_5AS_E5FD82E36 N 0.000
Traes_5BS_9F043AE17 Triticum aestivum Traes_5BS_9F043AE17 N 0.000
Aquca_003_00875 Aquilegia coerulea Aquca_003_00875 N 0.000
Pavir.J11699 Panicum virgatum Pavir.J11699 N 0.000
Pavir.J23083 Panicum virgatum Pavir.J23083 N 0.000
MLOC_64240 Hordeum vulgare MLOC_64240 N 0.000
BGIOSGA037778 Oryza indica BGIOSGA037778 N 0.000
BRADI4G02060 Brachypodium distachyon BRADI4G02060 N 0.000
BRADI4G34800 Brachypodium distachyon BRADI4G34800 N 0.000
F775_31820 Aegilops tauschii F775_31820 N 0.000
GRMZM2G054277 Zea mays GRMZM2G054277 N 0.000
GRMZM2G179049 Zea mays GRMZM2G179049 N 0.000
LPERR12G15510 Leersia perrieri LPERR12G15510 N 0.000
MLOC_55957 Hordeum vulgare MLOC_55957 N 0.000
BGIOSGA025747 Oryza indica BGIOSGA025747 N 0.000
MLOC_72553 Hordeum vulgare MLOC_72553 N 0.000
OB09G22520 Oryza brachyantha OB09G22520 N 0.000
OB12G25170 Oryza brachyantha OB12G25170 N 0.000
OBART12G18490 Oryza barthii OBART12G18490 N 0.000
OGLUM07G14740 Oryza glumaepatula OGLUM07G14740 N 0.000
OGLUM12G20140 Oryza glumaepatula OGLUM12G20140 N 0.000
OMERI07G11790 Oryza meridionalis OMERI07G11790 N 0.000