CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo5g052290 *(Brassica oleracea)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	Bo5g052290	T081750_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ZAT6 M00861_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Franco-Zorrilla et al.(2014) ZAT6	0.802	0.913
ZAT10 M01852_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7255	0.798	0.913
ZAT10 M06799_2.00	Arabidopsis thaliana	WSHHCACT	AGTGDDSW	Dap-seq OMalley et al.(2016) STZ_colamp_a	0.798	0.913
ZAT10 M06800_2.00	Arabidopsis thaliana	YWSHNHCASTN	NASTGDNDSWR	Dap-seq OMalley et al.(2016) STZ_col	0.798	0.913
AZF2 M01854_2.00	Arabidopsis thaliana	NASTRNN	NNYASTN	PBM Weirauch et al.(2014) pTH8258	0.772	0.826
AZF1 M01860_2.00	Arabidopsis thaliana	NWSYDNN	NNHRSWN	PBM Weirauch et al.(2014) pTH7163	0.764	0.848
AZF1 M06826_2.00	Arabidopsis thaliana	WCACTVWCWNH	DNWGWBAGTGW	Dap-seq OMalley et al.(2016) AZF1_colamp_a	0.764	0.848
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Brassica oleracea* TFs

144 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CJA36291	Caenorhabditis japonica	CJA36291	N	0.000
PPA10006	Pristionchus pacificus	PPA10006	N	0.000
augustus_masked-nMf.1.1.scaf29399-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf29399-processed-gene-0.0	N	0.000
CGOC_0000108301	Cylicostephanus goldi	CGOC_0000108301	N	0.000
Hba_00666	Heterorhabditis bacteriophora	Hba_00666	N	0.000
L596_g25846	Steinernema carpocapsae	L596_g25846	N	0.000
SSTP_0000445600	Strongyloides stercoralis	SSTP_0000445600	N	0.000