Bo9g019120 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo9g019120 T081787_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.827 0.978
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.827 0.978
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.787 0.826
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.787 0.783
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.783 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.783 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.783 0.826
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.766 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g019120.1 C2H2 ZF 88 110
Bo9g019120.1 C2H2 ZF 152 174

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCHCODRAFT_67234 Schizophyllum commune SCHCODRAFT_67234 D 0.000
LACBIDRAFT_302761 Laccaria bicolor LACBIDRAFT_302761 I 0.000
estExt_Genewise1Plus.C_60615 Heterobasidion annosum estExt_Genewise1Plus.C_60615 I 0.000
V565_059490 Rhizoctonia solani V565_059490 I 0.000
SCLCIDRAFT_106216 Scleroderma citrinum SCLCIDRAFT_106216 I 0.000
PLEOSDRAFT_1113284 Pleurotus ostreatus PLEOSDRAFT_1113284 I 0.000
PLEOSDRAFT_1111862 Pleurotus ostreatus PLEOSDRAFT_1111862 I 0.000
PISMIDRAFT_29414 Pisolithus microcarpus PISMIDRAFT_29414 I 0.000
PAXRUDRAFT_138309 Paxillus rubicundulus PAXRUDRAFT_138309 I 0.000
M404DRAFT_997952 Pisolithus tinctorius M404DRAFT_997952 I 0.000
M378DRAFT_161851 Amanita muscaria M378DRAFT_161851 I 0.000
AGABI2DRAFT_113594 Agaricus bisporus AGABI2DRAFT_113594 I 0.000
GALMADRAFT_235239 Galerina marginata GALMADRAFT_235239 I 0.000
AGABI2DRAFT_193390 Agaricus bisporus AGABI2DRAFT_193390 I 0.000
CC1G_13782 Coprinopsis cinerea CC1G_13782 I 0.000
CY34DRAFT_492980 Suillus luteus CY34DRAFT_492980 I 0.000
CY34DRAFT_798473 Suillus luteus CY34DRAFT_798473 I 0.000
GALMADRAFT_129710 Galerina marginata GALMADRAFT_129710 I 0.000
HYDPIDRAFT_115133 Hydnomerulius pinastri HYDPIDRAFT_115133 I 0.000
GLOTRDRAFT_75085 Gloeophyllum trabeum GLOTRDRAFT_75085 I 0.000
GYMLUDRAFT_42558 Gymnopus luxurians GYMLUDRAFT_42558 I 0.000
HETIRDRAFT_459989 Heterobasidion irregulare HETIRDRAFT_459989 I 0.000
PILCRDRAFT_57067 Piloderma croceum PILCRDRAFT_57067 N 0.000
GALMADRAFT_249900 Galerina marginata GALMADRAFT_249900 N 0.000
PLEOSDRAFT_1073231 Pleurotus ostreatus PLEOSDRAFT_1073231 N 0.000
M413DRAFT_78578 Hebeloma cylindrosporum M413DRAFT_78578 N 0.000
CY34DRAFT_76851 Suillus luteus CY34DRAFT_76851 N 0.000
SCHCODRAFT_68628 Schizophyllum commune SCHCODRAFT_68628 N 0.000
JAAARDRAFT_543076 Jaapia argillacea JAAARDRAFT_543076 N 0.000