CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo9g181170 *(Brassica oleracea)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	Bo9g181170	T081800_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ZAT6 M00861_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Franco-Zorrilla et al.(2014) ZAT6	0.827	0.935
ZAT10 M01852_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7255	0.820	0.913
ZAT10 M06799_2.00	Arabidopsis thaliana	WSHHCACT	AGTGDDSW	Dap-seq OMalley et al.(2016) STZ_colamp_a	0.820	0.913
ZAT10 M06800_2.00	Arabidopsis thaliana	YWSHNHCASTN	NASTGDNDSWR	Dap-seq OMalley et al.(2016) STZ_col	0.820	0.913
AZF2 M01854_2.00	Arabidopsis thaliana	NASTRNN	NNYASTN	PBM Weirauch et al.(2014) pTH8258	0.798	0.804
AZF1 M01860_2.00	Arabidopsis thaliana	NWSYDNN	NNHRSWN	PBM Weirauch et al.(2014) pTH7163	0.787	0.826
AZF1 M06826_2.00	Arabidopsis thaliana	WCACTVWCWNH	DNWGWBAGTGW	Dap-seq OMalley et al.(2016) AZF1_colamp_a	0.787	0.826
ZAT9 M06817_2.00	Arabidopsis thaliana	YTACTWHH	DDWAGTAR	Dap-seq OMalley et al.(2016) At3g60580_col_a	0.775	0.696
ZAT4 M01168_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Lambert et al.(2019) pTH11142	0.775	0.674
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo9g181170.1	C2H2 ZF	87	109	HKCSVCDKTFSSYQALGGHKASH
Bo9g181170.1	C2H2 ZF	143	165	HVCSICNKSFATGQALGGHKRCH

Links
Other C2H2 ZF family TFs
Other *Brassica oleracea* TFs

180 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CCM_04628	Cordyceps militaris	CCM_04628	N
HMPREF1541_02465	Cyphellophora europaea	HMPREF1541_02465	N
VHEMI06846	Torrubiella hemipterigena	VHEMI06846	N