Bra029985 (Brassica rapa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bra029985 T081953_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.798 0.913
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.798 0.913
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.792 0.826
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.788 0.848
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.788 0.848
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.788 0.848
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.787 0.826
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.766 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.766 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029985.1-P C2H2 ZF 85 107
Bra029985.1-P C2H2 ZF 147 169

Links

Other C2H2 ZF family TFs
Other Brassica rapa TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ006378 Culex pipiens CpipJ_CPIJ006378 N 0.000
CpipJ_CPIJ006379 Culex pipiens CpipJ_CPIJ006379 N 0.000
AAEL002343 Aedes aegypti AAEL002343 N 0.000
AAEL014740 Aedes aegypti AAEL014740 N 0.000
ACEP14936 Atta cephalotes ACEP14936 N 0.000
ACYPI001635 Acyrthosiphon pisum ACYPI001635 N 0.000
ADAC003908 Anopheles darlingi ADAC003908 N 0.000
AGAP000056 Anopheles gambiae AGAP000056 N 0.000
CGI_10014877 Crassostrea gigas CGI_10014877 N 0.000
CPIJ006378 Culex quinquefasciatus CPIJ006378 N 0.000
CPIJ006379 Culex quinquefasciatus CPIJ006379 N 0.000
DAPPUDRAFT_59022 Daphnia pulex DAPPUDRAFT_59022 N 0.000
ENSAMEG00000018716 Ailuropoda melanoleuca ENSAMEG00000018716 N 0.000
ENSAPLG00000000714 Anas platyrhynchos ENSAPLG00000000714 N 0.000
NPAS3 Choloepus hoffmanni ENSCHOG00000013756 N 0.000
NPAS3 Callithrix jacchus ENSCJAG00000005437 N 0.000
NPAS3 Cavia porcellus ENSCPOG00000006976 N 0.000
Npas3 Dipodomys ordii ENSDORG00000000860 N 0.000
ENSECAG00000004630 Equus caballus ENSECAG00000004630 N 0.000
NPAS3 Erinaceus europaeus ENSEEUG00000006528 N 0.000
NPAS3 Echinops telfairi ENSETEG00000016603 N 0.000
NPAS3 Homo sapiens ENSG00000151322 N 0.000
NPAS3 Gallus gallus ENSGALG00000029022 N 0.000
NPAS3 Gorilla gorilla ENSGGOG00000022941 N 0.000
ENSLACG00000001145 Latimeria chalumnae ENSLACG00000001145 N 0.000
NPAS3 Loxodonta africana ENSLAFG00000007169 N 0.000
ENSMEUG00000012966 Macropus eugenii ENSMEUG00000012966 N 0.000
ENSMGAG00000016559 Meleagris gallopavo ENSMGAG00000016559 N 0.000
NPAS3 Macaca mulatta ENSMMUG00000014839 N 0.000
ENSMODG00000024103 Monodelphis domestica ENSMODG00000024103 N 0.000
ENSMPUG00000001046 Mustela putorius furo ENSMPUG00000001046 N 0.000
Npas3 Mus musculus ENSMUSG00000021010 N 0.000
ENSNLEG00000003239 Nomascus leucogenys ENSNLEG00000003239 N 0.000
ENSOANG00000014043 Ornithorhynchus anatinus ENSOANG00000014043 N 0.000
NPAS3 Otolemur garnettii ENSOGAG00000014886 N 0.000
NPAS3 Ochotona princeps ENSOPRG00000008184 N 0.000
NPAS3 Procavia capensis ENSPCAG00000007391 N 0.000
ENSPSIG00000017052 Pelodiscus sinensis ENSPSIG00000017052 N 0.000
NPAS3 Pan troglodytes ENSPTRG00000006249 N 0.000
NPAS3 Sorex araneus ENSSARG00000003164 N 0.000
ENSSHAG00000011475 Sarcophilus harrisii ENSSHAG00000011475 N 0.000
ENSSSCG00000024473 Sus scrofa ENSSSCG00000024473 N 0.000
ENSSTOG00000014736 Ictidomys tridecemlineatus ENSSTOG00000014736 N 0.000
NPAS3 Tupaia belangeri ENSTBEG00000016041 N 0.000
ENSTGUG00000011911 Taeniopygia guttata ENSTGUG00000011911 N 0.000
NPAS3 Tursiops truncatus ENSTTRG00000003266 N 0.000
NPAS3 Vicugna pacos ENSVPAG00000001108 N 0.000
trh Drosophila sechellia FBgn0025046 N 0.000
GA19928 Drosophila pseudoobscura FBgn0079924 N 0.000
GF24890 Drosophila ananassae FBgn0101882 N 0.000
GG14662 Drosophila erecta FBgn0106918 N 0.000
GH15456 Drosophila grimshawi FBgn0122928 N 0.000
GH23748 Drosophila grimshawi FBgn0131205 N 0.000
GI16736 Drosophila mojavensis FBgn0139484 N 0.000
GD25707 Drosophila simulans FBgn0196992 N 0.000
GJ12482 Drosophila virilis FBgn0199724 N 0.000
GK20151 Drosophila willistoni FBgn0222148 N 0.000
GE21022 Drosophila yakuba FBgn0238304 N 0.000
trh Drosophila melanogaster FBgn0262139 N 0.000
GB52114 Apis mellifera GB52114 N 0.000
HelroG63031 Helobdella robusta HelroG63031 N 0.000
ISCW018625 Ixodes scapularis ISCW018625 N 0.000
L798_01241 Zootermopsis nevadensis L798_01241 N 0.000
LotgiG127403 Lottia gigantea LotgiG127403 N 0.000
MCINX015160 Melitaea cinxia MCINX015160 N 0.000
NEMVEDRAFT_v1g96877 Nematostella vectensis NEMVEDRAFT_v1g96877 N 0.000
NV13641 Nasonia vitripennis NV13641 N 0.000
PHUM613040 Pediculus humanus PHUM613040 N 0.000
SMAR015279 Strigamia maritima SMAR015279 N 0.000
SPU_014249 Strongylocentrotus purpuratus SPU_014249 N 0.000
TC001448 Tribolium castaneum TC001448 N 0.000
tetur01g16040 Tetranychus urticae tetur01g16040 N 0.000
Aan_R007988 Calypte anna Aan_R007988 N 0.000
Afo_R000495 Aptenodytes forsteri Afo_R000495 N 0.000
Brh_R013374 Buceros rhinoceros Brh_R013374 N 0.000
Cflo_02462--XP_391937.2_APIME Camponotus floridanus Cflo_02462--XP_391937.2_APIME N 0.000
ENSP00000348460-D1 Bos grunniens ENSP00000348460-D1 N 0.000
ENSP00000348460 Macaca fascicularis ENSP00000348460 N 0.000
Gfo_R012966 Geospiza fortis Gfo_R012966 N 0.000
Hsal_10736--XP_391937.2_APIME Harpegnathos saltator Hsal_10736--XP_391937.2_APIME N 0.000
Pvit_04747 Pogona vitticeps Pvit_04747 N 0.000
Tal_R006980 Tyto alba Tal_R006980 N 0.000
gw.84.113.1 Branchiostoma floridae gw.84.113.1 N 0.000
Ocbimv22029779m.g Octopus bimaculoides Ocbimv22029779m.g N 0.000
Sakowv30006415m.g Saccoglossus kowalevskii Sakowv30006415m.g N 0.000
CLEC007310 Cimex lectularius CLEC007310 N 0.000
LCUP010821 Lucilia cuprina LCUP010821 N 0.000
LDEC011477 Leptinotarsa decemlineata LDEC011477 N 0.000
npas3 Xenopus tropicalis XB-GENE-999791 N 0.000
AARA001122 Anopheles arabiensis AARA001122 N 0.000
AATE003730 Anopheles atroparvus AATE003730 N 0.000
ACOM029080 Anopheles coluzzii ACOM029080 N 0.000
ACUA021406 Anopheles culicifacies ACUA021406 N 0.000
ADIR001051 Anopheles dirus ADIR001051 N 0.000
AEPI007278 Anopheles epiroticus AEPI007278 N 0.000
AFAF017713 Anopheles farauti AFAF017713 N 0.000
AFUN004699 Anopheles funestus AFUN004699 N 0.000
AMAM000698 Anopheles maculatus AMAM000698 N 0.000
AMEC022213 Anopheles melas AMEC022213 N 0.000
AMEM001368 Anopheles merus AMEM001368 N 0.000
AMIN002121 Anopheles minimus AMIN002121 N 0.000
AQUA005712 Anopheles quadriannulatus AQUA005712 N 0.000
ASIS013948 Anopheles sinensis ASIS013948 N 0.000
ASTEI06194 Anopheles stephensi ASTEI06194 N 0.000
BGLB001139 Biomphalaria glabrata BGLB001139 N 0.000
MDOA009035 Musca domestica MDOA009035 N 0.000