PRDM4 (Choloepus hoffmanni)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCHOG00000001744 T088746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.823 0.985
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.823 0.985
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.823 0.985
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.823 0.985
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000001546 C2H2 ZF 510 532
ENSCHOP00000001546 C2H2 ZF 538 560
ENSCHOP00000001546 C2H2 ZF 566 588
ENSCHOP00000001546 C2H2 ZF 594 616
ENSCHOP00000001546 C2H2 ZF 622 644
ENSCHOP00000001546 C2H2 ZF 650 671

Links

Other C2H2 ZF family TFs
Other Choloepus hoffmanni TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10002005m.g Citrus clementina Ciclev10002005m.g N 0.000
Traes_7AL_25850F96F Triticum aestivum Traes_7AL_25850F96F N 0.000
Traes_7DL_3CE000E38 Triticum aestivum Traes_7DL_3CE000E38 N 0.000
TRIUR3_33804 Triticum urartu TRIUR3_33804 N 0.000
Ca_20172 Cicer arietinum Ca_20172 N 0.000
Cla023847 Citrullus lanatus Cla023847 N 0.000
30170.m014243 Ricinus communis 30170.m014243 N 0.000
Cucsa.272470 Cucumis sativus Cucsa.272470 N 0.000
mgf016987m Mimulus guttatus mgf016987m N 0.000
mgf025972m Mimulus guttatus mgf025972m N 0.000
Aquca_095_00028 Aquilegia coerulea Aquca_095_00028 N 0.000
TCM_034804 Theobroma cacao TCM_034804 N 0.000
evm.TU.contig_24967.6 Carica papaya evm.TU.contig_24967.6 N 0.000
evm.TU.supercontig_438.4 Carica papaya evm.TU.supercontig_438.4 N 0.000
Gorai.009G309200 Gossypium raimondii Gorai.009G309200 N 0.000
Lus10040069.g Linum usitatissimum Lus10040069.g N 0.000
orange1.1g022379m.g Citrus sinensis orange1.1g022379m.g N 0.000
Pavir.Da00593 Panicum virgatum Pavir.Da00593 N 0.000
Pavir.Db00825 Panicum virgatum Pavir.Db00825 N 0.000
PK05989.1 Cannabis sativa PK05989.1 N 0.000
LjSGA_008446.2 Lotus japonicus LjSGA_008446.2 N 0.000
OBART06G21250 Oryza barthii OBART06G21250 N 0.000
BRADI1G35790 Brachypodium distachyon BRADI1G35790 N 0.000
F775_26495 Aegilops tauschii F775_26495 N 0.000
GLYMA02G19754 Glycine max GLYMA02G19754 N 0.000
GRMZM2G025812 Zea mays GRMZM2G025812 N 0.000
GSMUA_Achr1G19750_001 Musa acuminata GSMUA_Achr1G19750_001 N 0.000
LPERR06G17810 Leersia perrieri LPERR06G17810 N 0.000
MLOC_22013 Hordeum vulgare MLOC_22013 N 0.000
MTR_1g050502 Medicago truncatula MTR_1g050502 N 0.000
OB06G29280 Oryza brachyantha OB06G29280 N 0.000
BGIOSGA023284 Oryza indica BGIOSGA023284 N 0.000
OGLUM06G22450 Oryza glumaepatula OGLUM06G22450 N 0.000
OMERI01G31300 Oryza meridionalis OMERI01G31300 N 0.000
ONIVA06G25200 Oryza nivara ONIVA06G25200 N 0.000
ORUFI06G22890 Oryza rufipogon ORUFI06G22890 N 0.000
BZIP50 Oryza sativa OS06G0622700 N 0.000
Sb04g006400 Sorghum bicolor Sb04g006400 N 0.000
Sb10g024430 Sorghum bicolor Sb10g024430 N 0.000
Si006978m.g Setaria italica Si006978m.g N 0.000
Si017847m.g Setaria italica Si017847m.g N 0.000