PRDM1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000006332 T089333_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.827 0.991
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.825 0.991
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.825 0.991
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.825 0.991
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.825 0.991
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.825 0.991
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.825 0.991
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.825 0.991
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.825 0.991
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.825 0.991
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.825 0.991
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.825 0.991
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.825 0.991
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.825 0.991
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.825 0.991
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.825 0.991
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000011698 C2H2 ZF 441 463
ENSCJAP00000011698 C2H2 ZF 469 491
ENSCJAP00000011698 C2H2 ZF 497 519
ENSCJAP00000011698 C2H2 ZF 525 547
ENSCJAP00000011698 C2H2 ZF 553 574
ENSCJAP00000011710 C2H2 ZF 575 597
ENSCJAP00000011710 C2H2 ZF 603 625
ENSCJAP00000011710 C2H2 ZF 631 653
ENSCJAP00000011710 C2H2 ZF 659 681
ENSCJAP00000011710 C2H2 ZF 687 708
ENSCJAP00000041972 C2H2 ZF 538 560
ENSCJAP00000041972 C2H2 ZF 566 588
ENSCJAP00000041972 C2H2 ZF 594 616
ENSCJAP00000041972 C2H2 ZF 622 644
ENSCJAP00000041972 C2H2 ZF 650 671

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Mypop Mus musculus ENSMUSG00000048481 D
Pvit_16908 Pogona vitticeps Pvit_16908 I
ENSAMEG00000000662 Ailuropoda melanoleuca ENSAMEG00000000662 I
ENSP00000325402-D1 Bos grunniens ENSP00000325402-D1 I
MYPOP Tursiops truncatus ENSTTRG00000014314 I
ENSSTOG00000001557 Ictidomys tridecemlineatus ENSSTOG00000001557 I
ENSSSCG00000003097 Sus scrofa ENSSSCG00000003097 I
ENSSHAG00000002071 Sarcophilus harrisii ENSSHAG00000002071 I
Mypop Rattus norvegicus ENSRNOG00000014132 I
MYPOP Pan troglodytes ENSPTRG00000028972 I
MYPOP Procavia capensis ENSPCAG00000005499 I
ENSPANG00000002240 Papio anubis ENSPANG00000002240 I
MYPOP Oryctolagus cuniculus ENSOCUG00000029475 I
ENSOARG00000010393 Ovis aries ENSOARG00000010393 I
ENSNLEG00000002401 Nomascus leucogenys ENSNLEG00000002401 I
ENSMPUG00000005494 Mustela putorius furo ENSMPUG00000005494 I
MYPOP Monodelphis domestica ENSMODG00000021531 I
ENSMMUG00000028745 Macaca mulatta ENSMMUG00000028745 I
ENSMICG00000001899 Microcebus murinus ENSMICG00000001899 I
FBXO46 Loxodonta africana ENSLAFG00000027244 I
ENSLACG00000014521 Latimeria chalumnae ENSLACG00000014521 I
MYPOP Gorilla gorilla ENSGGOG00000017080 I
MYPOP Homo sapiens ENSG00000176182 I
ENSCSAG00000003108 Chlorocebus sabaeus ENSCSAG00000003108 I
MYPOP Cavia porcellus ENSCPOG00000012168 I
MYPOP Callithrix jacchus ENSCJAG00000036087 I
MYPOP Canis familiaris ENSCAFG00000023848 I