SCRT1 (Callithrix jacchus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCJAG00000021406 T089693_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.827 1.000
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.827 1.000
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.827 1.000
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.827 1.000
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000039837 C2H2 ZF 121 143
ENSCJAP00000039837 C2H2 ZF 153 174
ENSCJAP00000039837 C2H2 ZF 178 200
ENSCJAP00000039837 C2H2 ZF 206 228
ENSCJAP00000039837 C2H2 ZF 234 255
ENSCJAP00000039838 C2H2 ZF 156 178
ENSCJAP00000039838 C2H2 ZF 188 209
ENSCJAP00000039838 C2H2 ZF 213 235
ENSCJAP00000039838 C2H2 ZF 241 263
ENSCJAP00000039838 C2H2 ZF 269 290
ENSCJAP00000039839 C2H2 ZF 192 214
ENSCJAP00000039839 C2H2 ZF 224 245
ENSCJAP00000039839 C2H2 ZF 249 271
ENSCJAP00000039839 C2H2 ZF 277 299
ENSCJAP00000039839 C2H2 ZF 305 326
ENSCJAP00000043589 C2H2 ZF 179 201
ENSCJAP00000043589 C2H2 ZF 211 232
ENSCJAP00000043589 C2H2 ZF 236 258
ENSCJAP00000043589 C2H2 ZF 264 286
ENSCJAP00000043589 C2H2 ZF 292 313

Links

Other C2H2 ZF family TFs
Other Callithrix jacchus TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA008411 Oryza indica BGIOSGA008411 N
BRADI3G45590 Brachypodium distachyon BRADI3G45590 N
GRMZM5G885700 Zea mays GRMZM5G885700 N
LPERR02G16200 Leersia perrieri LPERR02G16200 N
OBART02G20190 Oryza barthii OBART02G20190 N
OLONG_002405 Oryza longistaminata OLONG_002405 N
OMERI02G19990 Oryza meridionalis OMERI02G19990 N
ONIVA02G22300 Oryza nivara ONIVA02G22300 N
OPUNC02G18120 Oryza punctata OPUNC02G18120 N
ORGLA02G0173200 Oryza glaberrima ORGLA02G0173200 N
ORUFI02G21320 Oryza rufipogon ORUFI02G21320 N
OS02G0551900 Oryza sativa OS02G0551900 N
Traes_6BL_CC009B78A Triticum aestivum Traes_6BL_CC009B78A N
Traes_6DL_F47CFC6D9 Triticum aestivum Traes_6DL_F47CFC6D9 N