CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

zbtb18 *(Danio rerio)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	ENSDARG00000028228	T090874_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ZBTB18 M02916_2.00	Homo sapiens	VMACATCTGGAWN	NWTCCAGATGTKB	SELEX Jolma et al.(2013) ZNF238_1	0.821	0.978
ZBTB18 M02917_2.00	Homo sapiens	NMACATCTGGMHN	NDKCCAGATGTKN	SELEX Jolma et al.(2013) ZNF238_2	0.821	0.978
ZBTB18 M04585_2.00	Homo sapiens	NMACATCTGGMHN	NDKCCAGATGTKN	SELEX Yin et al.(2017) ZBTB18_eDBD_HT-SELEX	0.821	0.978
ZBTB18 M08350_2.00	Homo sapiens	MRCAKCTGG	CCAGMTGYK	ChIP-seq Schmitges et al.(2016) Q99592_2-4.RCADE	0.821	0.978
ZBTB18 M08928_2.00	Homo sapiens	VMRCAKCTGGV	BCCAGMTGYKB	Misc Kulakovskiy et al.(2013) ZBT18_HUMAN.H11MO.0.C	0.821	0.978
ZBTB18 M10282_2.00	Homo sapiens	NNMACATCTGGM	KCCAGATGTKNN	Transfac Matys et al.(2006) V$RP58_01	0.821	0.978
ZBTB18 M10283_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$RP58_Q3	0.821	0.978
ZBTB18 M04586_2.00	Homo sapiens	NMACATCTGBHNN	NNDVCAGATGTKN	SELEX Yin et al.(2017) ZBTB18_eDBD_Methyl-HT-SELEX	0.821	0.978
ZBTB18 M08257_2.00	Homo sapiens	NMGCAGCTGCKB	VMGCAGCTGCKN	ChIP-seq Najafabadi et al.(2015b) ZNF238	0.821	0.978
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSDARP00000141791	C2H2 ZF	385	407	FMCPLCNKVFPSPHILQIHLSTH
ENSDARP00000141791	C2H2 ZF	426	447	TCSICGKTFSCMYTLKRHERTH
ENSDARP00000141791	C2H2 ZF	453	475	YTCTTCGKSFQYSHNLSRHAVVH
ENSDARP00000141791	C2H2 ZF	481	504	HACKWCERRFTQSGDLYRHIRKFH

Links
Other C2H2 ZF family TFs
Other *Danio rerio* TFs

65 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BRADI3G41930	Brachypodium distachyon	BRADI3G41930	N	0.000
BRADI3G41950	Brachypodium distachyon	BRADI3G41950	N	0.000
MLOC_40535	Hordeum vulgare	MLOC_40535	N	0.000
Sb03g006510	Sorghum bicolor	Sb03g006510	N	0.000
Sb07g025320	Sorghum bicolor	Sb07g025320	N	0.000
Si005033m.g	Setaria italica	Si005033m.g	N	0.000
Si015072m.g	Setaria italica	Si015072m.g	N	0.000