scrt1b (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000040214 T090912_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.799 0.868
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.799 0.868
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.799 0.868
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.799 0.868
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.792 0.921
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.792 0.921
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.792 0.921
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.792 0.921
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.790 0.868
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.790 0.868
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.790 0.868
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.781 0.851
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.781 0.851
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.781 0.851
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058828 C2H2 ZF 130 152
ENSDARP00000058828 C2H2 ZF 161 183
ENSDARP00000058828 C2H2 ZF 187 209
ENSDARP00000058828 C2H2 ZF 215 237
ENSDARP00000058828 C2H2 ZF 243 264

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSTOG00000013236 Ictidomys tridecemlineatus ENSSTOG00000013236 N 0.000
ZNF572 Ochotona princeps ENSOPRG00000004949 N 0.000
ENSPANG00000024290 Papio anubis ENSPANG00000024290 N 0.000
ENSPPYG00000018871 Pongo abelii ENSPPYG00000018871 N 0.000
ZNF572 Pan troglodytes ENSPTRG00000020571 N 0.000
ZNF572 Pteropus vampyrus ENSPVAG00000005897 N 0.000
ZNF572 Sorex araneus ENSSARG00000005346 N 0.000
ENSSHAG00000005229 Sarcophilus harrisii ENSSHAG00000005229 N 0.000
ZNF572 Sus scrofa ENSSSCG00000005971 N 0.000
ZNF572 Otolemur garnettii ENSOGAG00000015777 N 0.000
ZNF572 Tupaia belangeri ENSTBEG00000002733 N 0.000
ENSTSYG00000006409 Tarsius syrichta ENSTSYG00000006409 N 0.000
ZNF572 Tursiops truncatus ENSTTRG00000015484 N 0.000
ZNF572 Vicugna pacos ENSVPAG00000006529 N 0.000
ENSBTAP00000011959-D1 Bos grunniens ENSBTAP00000011959-D1 N 0.000
ENSP00000319305 Macaca fascicularis ENSP00000319305 N 0.000
Myotis_brandtii_ZNF572_10018150 Myotis brandtii Myotis_brandtii_ZNF572_10018150 N 0.000
ZNF572 Gorilla gorilla ENSGGOG00000006964 N 0.000
ZNF572 Bos taurus ENSBTAG00000009072 N 0.000
ZNF572 Canis familiaris ENSCAFG00000030125 N 0.000
ZNF572 Callithrix jacchus ENSCJAG00000012779 N 0.000
ENSCSAG00000010162 Chlorocebus sabaeus ENSCSAG00000010162 N 0.000
ZNF572 Dasypus novemcinctus ENSDNOG00000009854 N 0.000
ENSDORG00000009190 Dipodomys ordii ENSDORG00000009190 N 0.000
ZNF572 Equus caballus ENSECAG00000012206 N 0.000
ZNF572 Felis catus ENSFCAG00000024394 N 0.000
ENSAMEG00000000301 Ailuropoda melanoleuca ENSAMEG00000000301 N 0.000
ZNF572 Microcebus murinus ENSMICG00000017483 N 0.000
ZNF572 Myotis lucifugus ENSMLUG00000000608 N 0.000
ENSMMUG00000021103 Macaca mulatta ENSMMUG00000021103 N 0.000
ZNF572 Monodelphis domestica ENSMODG00000001814 N 0.000
ENSMPUG00000001315 Mustela putorius furo ENSMPUG00000001315 N 0.000
ENSNLEG00000005528 Nomascus leucogenys ENSNLEG00000005528 N 0.000
ENSOARG00000008657 Ovis aries ENSOARG00000008657 N 0.000