ENSFALG00000001479 (Ficedula albicollis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSFALG00000001479 T094183_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.812 0.935
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.812 0.935
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.812 0.935
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.810 0.928
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.810 0.928
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.810 0.928
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.810 0.928
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.810 0.928
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.810 0.928
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.800 0.920
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.787 0.848
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.786 0.891
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.786 0.891
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.786 0.891
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.786 0.891
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.786 0.891
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.786 0.891
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.786 0.891
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.786 0.891
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.784 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000001541 C2H2 ZF 168 191
ENSFALP00000001541 C2H2 ZF 197 219
ENSFALP00000001541 C2H2 ZF 252 274
ENSFALP00000001541 C2H2 ZF 280 302
ENSFALP00000001541 C2H2 ZF 308 330
ENSFALP00000001541 C2H2 ZF 336 359

Links

Other C2H2 ZF family TFs
Other Ficedula albicollis TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
REB1 Saccharomyces cerevisiae YBR049C D
SKUD_123301 Saccharomyces kudriavzevii SKUD_123301 I
Kwal_22993 Kluyveromyces waltii Kwal_22993 I
KLTH0C07788g Kluyveromyces thermotolerans KLTH0C07788g I
3333_Multiple Saccharomyces mikatae 3333_Multiple I
21379_Multiple Saccharomyces bayanus 21379_Multiple I
1177_YBR049C Saccharomyces paradoxus 1177_YBR049C I
Scas_Contig661.16 Saccharomyces castellii Scas_Contig661.16 I
TPHA_0M00950 Tetrapisispora phaffii TPHA_0M00950 I
TDEL_0D03690 Torulaspora delbrueckii TDEL_0D03690 I
SKUD_176006 Saccharomyces kudriavzevii SKUD_176006 I
AACERI_AaceriABL092W Saccharomycetaceae sp ashbya aceri AACERI_AaceriABL092W I
NDAI_0A06300 Naumovozyma dairenensis NDAI_0A06300 I
NDAI_0A05820 Naumovozyma dairenensis NDAI_0A05820 I
NCAS_0I01690 Naumovozyma castellii NCAS_0I01690 I
NCAS_0A10470 Naumovozyma castellii NCAS_0A10470 I
LALA0_S02e08900g Lachancea lanzarotensis LALA0_S02e08900g I
KNAG_0H01320 Kazachstania naganishii KNAG_0H01320 I
KLTH0C07788g Lachancea thermotolerans KLTH0C07788g I
KAFR_0E01200 Kazachstania africana KAFR_0E01200 I
Ecym_5138 Eremothecium cymbalariae Ecym_5138 I
AGOS_ABL092W Ashbya gossypii AGOS_ABL092W I