ENSFALG00000013342 (Ficedula albicollis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSFALG00000013342 T094344_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.821 0.971
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.821 0.971
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.821 0.971
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.821 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000013921 C2H2 ZF 586 608
ENSFALP00000013921 C2H2 ZF 614 636
ENSFALP00000013921 C2H2 ZF 642 664
ENSFALP00000013921 C2H2 ZF 670 692
ENSFALP00000013921 C2H2 ZF 698 720
ENSFALP00000013921 C2H2 ZF 726 747

Links

Other C2H2 ZF family TFs
Other Ficedula albicollis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00076g275 Arthrobotrys oligospora AOL_s00076g275 I 0.000
DRE_02367 Drechslerella stenobrocha DRE_02367 I 0.000
ENSPSIG00000017578 Pelodiscus sinensis ENSPSIG00000017578 I 0.000
H072_2579 Dactylellina haptotyla H072_2579 I 0.000
TSTA_121740 Talaromyces stipitatus TSTA_121740 I 0.000
Cmyd_10005683 Chelonia mydas Cmyd_10005683 I 0.000
CAOG_07434 Capsaspora owczarzaki CAOG_07434 N 0.000
JL09_g2006 Pichia kudriavzevii JL09_g2006 N 0.000
M407DRAFT_44130 Tulasnella calospora M407DRAFT_44130 N 0.000
PV10_05533 Exophiala mesophila PV10_05533 N 0.000
MCOS_0001020701 Mesocestoides corti MCOS_0001020701 N 0.000