SCRT1 (Homo sapiens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSG00000261678 T095485_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00		 Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1		 (Direct) (Direct)
SCRT1
M04655_2.00		 Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX		 (Direct) (Direct)
SCRT1
M04656_2.00		 Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX		 (Direct) (Direct)
SCRT1
M08397_2.00		 Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.786 0.885
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.786 0.885
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.786 0.885
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.785 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.785 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.785 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.785 0.858
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.767 0.814
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.767 0.814
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.767 0.814
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000455711 C2H2 ZF 191 213
ENSP00000455711 C2H2 ZF 223 244
ENSP00000455711 C2H2 ZF 248 270
ENSP00000455711 C2H2 ZF 276 298
ENSP00000455711 C2H2 ZF 304 325

Links

Other C2H2 ZF family TFs
Other Homo sapiens TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000012318 Astyanax mexicanus ENSAMXG00000012318 I
T265_00048 Opisthorchis viverrini T265_00048 I
csin109208 Clonorchis sinensis csin109208 I
ANCCEY_00370 Ancylostoma ceylanicum ANCCEY_00370 I
SMU15033928 Schmidtea mediterranea SMU15033928 I
SMU15031708 Schmidtea mediterranea SMU15031708 I
Sakowv30026420m.g Saccoglossus kowalevskii Sakowv30026420m.g I
tetur11g00650 Tetranychus urticae tetur11g00650 I
zic6 Danio rerio ENSDARG00000071496 I
CGI_10016117 Crassostrea gigas CGI_10016117 I
ENSCSAVG00000002454 Ciona savignyi ENSCSAVG00000002454 N
ENSCSAVG00000002465 Ciona savignyi ENSCSAVG00000002465 N
ENSCSAVG00000002450 Ciona savignyi ENSCSAVG00000002450 N
HelroG77001 Helobdella robusta HelroG77001 N
ENSCSAVG00000002442 Ciona savignyi ENSCSAVG00000002442 N
ENSCING00000022318 Ciona intestinalis ENSCING00000022318 N
ENSCING00000021681 Ciona intestinalis ENSCING00000021681 N
ENSCING00000002517 Ciona intestinalis ENSCING00000002517 N
ENSCING00000000012 Ciona intestinalis ENSCING00000000012 N
ENSCING00000000010 Ciona intestinalis ENSCING00000000010 N