PRDM4 (Gallus gallus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSGALG00000012619 T095918_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.821 0.978
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.821 0.978
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.821 0.978
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.821 0.978
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000020571 C2H2 ZF 592 614
ENSGALP00000020571 C2H2 ZF 620 642
ENSGALP00000020571 C2H2 ZF 648 670
ENSGALP00000020571 C2H2 ZF 676 698
ENSGALP00000020571 C2H2 ZF 704 726
ENSGALP00000020571 C2H2 ZF 732 753

Links

Other C2H2 ZF family TFs
Other Gallus gallus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.000
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I 0.000
MDP0000135652 Malus domestica MDP0000135652 I 0.000
MDP0000144516 Malus domestica MDP0000144516 I 0.000
gene31068-v1.0-hybrid Fragaria vesca gene31068-v1.0-hybrid N 0.000