PRDM4 (Microcebus murinus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMICG00000007807 T098459_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.802 0.978
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.802 0.978
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.802 0.978
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.802 0.978
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMICP00000007100 C2H2 ZF 590 612
ENSMICP00000007100 C2H2 ZF 618 640
ENSMICP00000007100 C2H2 ZF 646 668
ENSMICP00000007100 C2H2 ZF 674 696
ENSMICP00000007100 C2H2 ZF 702 724
ENSMICP00000007100 C2H2 ZF 730 751

Links

Other C2H2 ZF family TFs
Other Microcebus murinus TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PISMIDRAFT_17242 Pisolithus microcarpus PISMIDRAFT_17242 N 0.000
PISMIDRAFT_20426 Pisolithus microcarpus PISMIDRAFT_20426 N 0.000
PISMIDRAFT_20118 Pisolithus microcarpus PISMIDRAFT_20118 N 0.000
PISMIDRAFT_19675 Pisolithus microcarpus PISMIDRAFT_19675 N 0.000
PISMIDRAFT_19573 Pisolithus microcarpus PISMIDRAFT_19573 N 0.000
PISMIDRAFT_19250 Pisolithus microcarpus PISMIDRAFT_19250 N 0.000
PISMIDRAFT_18990 Pisolithus microcarpus PISMIDRAFT_18990 N 0.000
PISMIDRAFT_18376 Pisolithus microcarpus PISMIDRAFT_18376 N 0.000
PISMIDRAFT_17421 Pisolithus microcarpus PISMIDRAFT_17421 N 0.000
PISMIDRAFT_10103 Pisolithus microcarpus PISMIDRAFT_10103 N 0.000
PISMIDRAFT_16695 Pisolithus microcarpus PISMIDRAFT_16695 N 0.000
PISMIDRAFT_15999 Pisolithus microcarpus PISMIDRAFT_15999 N 0.000
PISMIDRAFT_14290 Pisolithus microcarpus PISMIDRAFT_14290 N 0.000
PISMIDRAFT_13876 Pisolithus microcarpus PISMIDRAFT_13876 N 0.000
PISMIDRAFT_13224 Pisolithus microcarpus PISMIDRAFT_13224 N 0.000
PISMIDRAFT_12864 Pisolithus microcarpus PISMIDRAFT_12864 N 0.000
PISMIDRAFT_12285 Pisolithus microcarpus PISMIDRAFT_12285 N 0.000
PISMIDRAFT_10373 Pisolithus microcarpus PISMIDRAFT_10373 N 0.000