PRDM1 (Oryctolagus cuniculus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSOCUG00000015495 T103132_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.819 0.982
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.817 0.965
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.817 0.965
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.817 0.965
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.817 0.965
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.817 0.965
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.817 0.965
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.817 0.965
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.817 0.965
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.817 0.965
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.817 0.965
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.817 0.965
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.817 0.965
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.817 0.965
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.817 0.965
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.817 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000013310 C2H2 ZF 628 650
ENSOCUP00000013310 C2H2 ZF 656 678
ENSOCUP00000013310 C2H2 ZF 684 706
ENSOCUP00000013310 C2H2 ZF 712 734
ENSOCUP00000013310 C2H2 ZF 740 761
ENSOCUP00000027123 C2H2 ZF 582 604
ENSOCUP00000027123 C2H2 ZF 610 632
ENSOCUP00000027123 C2H2 ZF 638 660
ENSOCUP00000027123 C2H2 ZF 666 688
ENSOCUP00000027123 C2H2 ZF 694 715

Links

Other C2H2 ZF family TFs
Other Oryctolagus cuniculus TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAZ Homo sapiens ENSG00000103495 D
Maz Mus musculus ENSMUSG00000030678 D
MAZ Otolemur garnettii ENSOGAG00000033940 I
Pvit_12096 Pogona vitticeps Pvit_12096 I
Myotis_brandtii_MAZ_10014461 Myotis brandtii Myotis_brandtii_MAZ_10014461 I
ENSBTAP00000026016-D1 Bos grunniens ENSBTAP00000026016-D1 I
Alligator_sinensis_CCG001391.4 Alligator sinensis Alligator_sinensis_CCG001391.4 I
MAZ Sus scrofa ENSSSCG00000025321 I
ENSSHAG00000009478 Sarcophilus harrisii ENSSHAG00000009478 I
Maz Rattus norvegicus ENSRNOG00000055082 I
MAZ Pan troglodytes ENSPTRG00000007968 I
MAZ Anolis carolinensis ENSACAG00000014698 I
ENSNLEG00000007559 Nomascus leucogenys ENSNLEG00000007559 I
ENSGMOG00000001761 Gadus morhua ENSGMOG00000001761 I
ENSGACG00000014840 Gasterosteus aculeatus ENSGACG00000014840 I
ENSECAG00000024341 Equus caballus ENSECAG00000024341 I
MAZ Cavia porcellus ENSCPOG00000019886 I
ENSAMEG00000014864 Ailuropoda melanoleuca ENSAMEG00000014864 I