ENSPSIG00000014529 (Pelodiscus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPSIG00000014529 T107699_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.825 0.986
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.825 0.986
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.825 0.986
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.825 0.986
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.825 0.986
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.825 0.986
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.825 0.986
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.825 0.986
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.825 0.986
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.825 0.986
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.825 0.986
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.825 0.986
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.825 0.986
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.825 0.986
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.825 0.986
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.819 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000016354 C2H2 ZF 521 544
ENSPSIP00000016354 C2H2 ZF 549 571
ENSPSIP00000016354 C2H2 ZF 577 599
ENSPSIP00000016354 C2H2 ZF 605 627
ENSPSIP00000016354 C2H2 ZF 633 655
ENSPSIP00000016354 C2H2 ZF 661 684

Links

Other C2H2 ZF family TFs
Other Pelodiscus sinensis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC055 Arabidopsis thaliana AT3G15500 D
NAC019 Arabidopsis thaliana AT1G52890 D
Carubv10014211m.g Capsella rubella Carubv10014211m.g I
28219.m000090 Ricinus communis 28219.m000090 I
Carubv10009816m.g Capsella rubella Carubv10009816m.g I
Carubv10005353m.g Capsella rubella Carubv10005353m.g I
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I
mgf001766m Mimulus guttatus mgf001766m I
Cucsa.341800 Cucumis sativus Cucsa.341800 I
Cucsa.074610 Cucumis sativus Cucsa.074610 I
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I
cassava22631.valid.m1 Manihot esculenta cassava22631.valid.m1 I
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I
chr1.CM0104.240.nc Lotus japonicus chr1.CM0104.240.nc I
PK20135.1 Cannabis sativa PK20135.1 I
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I
MDP0000262032 Malus domestica MDP0000262032 I
MDP0000132623 Malus domestica MDP0000132623 I
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I
Bra018998 Brassica rapa Bra018998 I
Pm011603 Prunus mume Pm011603 I
GLYMA06G38410 Glycine max GLYMA06G38410 I
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I
Bra027238 Brassica rapa Bra027238 I
Bra026353 Brassica rapa Bra026353 I
Bra021113 Brassica rapa Bra021113 I
Bra019052 Brassica rapa Bra019052 I
GLYMA12G22880 Glycine max GLYMA12G22880 I
Bra001596 Brassica rapa Bra001596 I
Bo7g111390 Brassica oleracea Bo7g111390 I
Bo6g030940 Brassica oleracea Bo6g030940 I
Bo5g127040 Brassica oleracea Bo5g127040 I
Bo3g066850 Brassica oleracea Bo3g066850 I
Bo1g128450 Brassica oleracea Bo1g128450 I
Bo1g048300 Brassica oleracea Bo1g048300 I
RD26 Arabidopsis thaliana AT4G27410 I
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I
Cla023770 Citrullus lanatus Cla023770 I
Cla011949 Citrullus lanatus Cla011949 I
Ca_21186 Cicer arietinum Ca_21186 I
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I
VIT_06s0004g03080 Vitis vinifera VIT_06s0004g03080 I
TCM_031364 Theobroma cacao TCM_031364 I
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I
GLYMA12G35000 Glycine max GLYMA12G35000 I
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I
PGSC0003DMG400025031 Solanum tuberosum PGSC0003DMG400025031 I
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I
MTR_8g059170 Medicago truncatula MTR_8g059170 I
MTR_2g079990 Medicago truncatula MTR_2g079990 I
GLYMA13G35550 Glycine max GLYMA13G35550 I
Eucgr.K01471 Eucalyptus grandis Eucgr.K01471 N