PRDM1 (Pteropus vampyrus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPVAG00000011732 T108687_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Prdm1
M08995_2.00 		Mus musculus
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_MOUSE.H11MO.0.A 		0.825 0.982
PRDM1
M02874_2.00 		Homo sapiens
NHACTTTCACTTTYN
NRAAAGTGAAAGTDN		 SELEX
Jolma et al.(2013)
PRDM1_1 		0.823 0.965
PRDM1
M02731_2.00 		Homo sapiens
YACTTTCACTTT
AAAGTGAAAGTR		 SELEX
Jolma et al.(2010)
PRDM1_dimer 		0.823 0.965
PRDM1
M04396_2.00 		Homo sapiens
NYACTTTCVCYN
NRGBGAAAGTRN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_HT-SELEX 		0.823 0.965
PRDM1
M08083_2.00 		Homo sapiens
NHACTTTCHY
RDGAAAGTDN		 ChIP-seq
Mathelier et al.(2014)
MA0508.2 		0.823 0.965
PRDM1
M07845_2.00 		Homo sapiens
NHACTTTCHCTTHYN
NRDAAGDGAAAGTDN		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_PRDM1_Stanford 		0.823 0.965
PRDM1
M08191_2.00 		Homo sapiens
ACTTTCAC
GTGAAAGT		 ChIP-seq
Contrino et al.(2012)
Mv110 		0.823 0.965
PRDM1
M08192_2.00 		Homo sapiens
HRTCACTTT
AAAGTGAYD		 ChIP-seq
Contrino et al.(2012)
Mv112 		0.823 0.965
PRDM1
M08276_2.00 		Homo sapiens
HHNBYVCTTTCHCYY
RRGDGAAAGBRVNDD		 ChIP-seq
Schmitges et al.(2016)
O75626.MEME 		0.823 0.965
PRDM1
M08854_2.00 		Homo sapiens
NNACTTTCHCTTYY
RRAAGDGAAAGTNN		 Misc
Kulakovskiy et al.(2013)
PRDM1_HUMAN.H11MO.0.A 		0.823 0.965
PRDM1
M09500_2.00 		Homo sapiens
ACTTTCHCTKNN
NNMAGDGAAAGT		 Misc
Heinz et al.(2010)
Hela-PRDM1_GSE31477 		0.823 0.965
PRDM1
M10108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q4 		0.823 0.965
PRDM1
M10109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6_01 		0.823 0.965
PRDM1
M10110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BLIMP1_Q6 		0.823 0.965
PRDM1
M10111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRDM1_03 		0.823 0.965
PRDM1
M04397_2.00 		Homo sapiens
NCACTTTCVCYN
NRGBGAAAGTGN		 SELEX
Yin et al.(2017)
PRDM1_eDBD_Methyl-HT-SELEX 		0.823 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000011060 C2H2 ZF 537 559
ENSPVAP00000011060 C2H2 ZF 565 587
ENSPVAP00000011060 C2H2 ZF 593 615
ENSPVAP00000011060 C2H2 ZF 621 643
ENSPVAP00000011060 C2H2 ZF 649 670

Links

Other C2H2 ZF family TFs
Other Pteropus vampyrus TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Zbtb7a Mus musculus ENSMUSG00000035011 D
ZBTB7A Homo sapiens ENSG00000178951 D
ZBTB7A Sus scrofa ENSSSCG00000029236 I
ZBTB7A Otolemur garnettii ENSOGAG00000033963 I
ENSONIG00000004814 Oreochromis niloticus ENSONIG00000004814 I
ENSPANG00000010574 Papio anubis ENSPANG00000010574 I
ENSPFOG00000001889 Poecilia formosa ENSPFOG00000001889 I
ENSPSIG00000017106 Pelodiscus sinensis ENSPSIG00000017106 I
ZBTB7A Pan troglodytes ENSPTRG00000010292 I
ZBTB7A Pteropus vampyrus ENSPVAG00000017500 I
Zbtb7a Rattus norvegicus ENSRNOG00000020161 I
ENSSHAG00000008804 Sarcophilus harrisii ENSSHAG00000008804 I
ZBTB7A Ornithorhynchus anatinus ENSOANG00000006290 I
zbtb7a Tetraodon nigroviridis ENSTNIG00000004415 I
zbtb7a Takifugu rubripes ENSTRUG00000017896 I
ZBTB7A Tursiops truncatus ENSTTRG00000006780 I
ENSXMAG00000012740 Xiphophorus maculatus ENSXMAG00000012740 I
Alligator_sinensis_CCG003245.1 Alligator sinensis Alligator_sinensis_CCG003245.1 I
Cmyd_10015601 Chelonia mydas Cmyd_10015601 I
Myotis_brandtii_ZBTB7A_10016304 Myotis brandtii Myotis_brandtii_ZBTB7A_10016304 I
Ogr12162 Ophisaurus gracilis Ogr12162 I
Pvit_09830 Pogona vitticeps Pvit_09830 I
ENSGMOG00000008925 Gadus morhua ENSGMOG00000008925 I
ENSAPLG00000011008 Anas platyrhynchos ENSAPLG00000011008 I
ZBTB7A Bos taurus ENSBTAG00000020117 I
ZBTB7A Canis familiaris ENSCAFG00000024335 I
ZBTB7A Callithrix jacchus ENSCJAG00000036210 I
ENSCPOG00000024829 Cavia porcellus ENSCPOG00000024829 I
ENSCSAG00000010775 Chlorocebus sabaeus ENSCSAG00000010775 I
zbtb7a Danio rerio ENSDARG00000039899 I
ENSFALG00000000874 Ficedula albicollis ENSFALG00000000874 I
zbtb7a Gasterosteus aculeatus ENSGACG00000012730 I
ENSOARG00000010857 Ovis aries ENSOARG00000010857 I
ENSLOCG00000005993 Lepisosteus oculatus ENSLOCG00000005993 I
ENSMEUG00000005804 Macropus eugenii ENSMEUG00000005804 I
ZBTB7A Myotis lucifugus ENSMLUG00000008667 I
ENSMMUG00000019103 Macaca mulatta ENSMMUG00000019103 I
ZBTB7A Monodelphis domestica ENSMODG00000000778 I
ENSMPUG00000004703 Mustela putorius furo ENSMPUG00000004703 I
ENSNLEG00000003007 Nomascus leucogenys ENSNLEG00000003007 I
ENSAMXG00000017946 Astyanax mexicanus ENSAMXG00000017946 I