LOC100909998 (Rattus norvegicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSRNOG00000015188 T109013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF2
M07780_2.00 		Homo sapiens
MGCGCCVYC
GRBGGCGCK		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF2.RCADE.OriginalMapping 		0.776 0.917
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000020367 C2H2 ZF 96 118
ENSRNOP00000020367 C2H2 ZF 124 146
ENSRNOP00000020367 C2H2 ZF 152 174
ENSRNOP00000020367 C2H2 ZF 180 202
ENSRNOP00000020367 C2H2 ZF 208 230
ENSRNOP00000020367 C2H2 ZF 236 258
ENSRNOP00000020367 C2H2 ZF 264 286
ENSRNOP00000020367 C2H2 ZF 292 314
ENSRNOP00000020367 C2H2 ZF 320 341

Links

Other C2H2 ZF family TFs
Other Rattus norvegicus TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G04930 Arabidopsis thaliana AT3G04930 D
PK20442.1 Cannabis sativa PK20442.1 D
mgf017918m Mimulus guttatus mgf017918m I
LjB12P21.40.nc Lotus japonicus LjB12P21.40.nc I
Aquca_003_00290 Aquilegia coerulea Aquca_003_00290 I
Aquca_026_00251 Aquilegia coerulea Aquca_026_00251 I
Bostr.2570s0201 Boechera stricta Bostr.2570s0201 I
Bostr.29827s0034 Boechera stricta Bostr.29827s0034 I
Cagra.1554s0002 Capsella grandiflora Cagra.1554s0002 I
Cagra.2179s0002 Capsella grandiflora Cagra.2179s0002 I
Carubv10001022m.g Capsella rubella Carubv10001022m.g I
Carubv10013683m.g Capsella rubella Carubv10013683m.g I
Ciclev10001378m.g Citrus clementina Ciclev10001378m.g I
Eucgr.H04388 Eucalyptus grandis Eucgr.H04388 I
evm.TU.supercontig_264.16 Carica papaya evm.TU.supercontig_264.16 I
gene16487-v1.0-hybrid Fragaria vesca gene16487-v1.0-hybrid I
Gorai.007G285700 Gossypium raimondii Gorai.007G285700 I
Gorai.013G121800 Gossypium raimondii Gorai.013G121800 I
Lus10000940.g Linum usitatissimum Lus10000940.g I
Lus10015944.g Linum usitatissimum Lus10015944.g I
Lus10019007.g Linum usitatissimum Lus10019007.g I
MDP0000274864 Malus domestica MDP0000274864 I
MDP0000290147 Malus domestica MDP0000290147 I
MDP0000931426 Malus domestica MDP0000931426 I
orange1.1g014693m.g Citrus sinensis orange1.1g014693m.g I
SapurV1A.0027s0820 Salix purpurea SapurV1A.0027s0820 I
SapurV1A.0276s0160 Salix purpurea SapurV1A.0276s0160 I
Thhalv10005455m.g Eutrema salsugineum Thhalv10005455m.g I
Thhalv10020724m.g Eutrema salsugineum Thhalv10020724m.g I
AMTR_s00045p00124580 Amborella trichopoda AMTR_s00045p00124580 I
PGSC0003DMG400003572 Solanum tuberosum PGSC0003DMG400003572 I
AT5G28040 Arabidopsis thaliana AT5G28040 I
Bo1g151840 Brassica oleracea Bo1g151840 I
Bo5g146880 Brassica oleracea Bo5g146880 I
Bo7g093330 Brassica oleracea Bo7g093330 I
Bra009986 Brassica rapa Bra009986 I
Bra040416 Brassica rapa Bra040416 I
fgenesh2_kg.3__469__AT3G04930.1 Arabidopsis lyrata fgenesh2_kg.3__469__AT3G04930.1 I
fgenesh2_kg.6__2771__AT5G28040.1 Arabidopsis lyrata fgenesh2_kg.6__2771__AT5G28040.1 I
GLYMA03G40520 Glycine max GLYMA03G40520 I
GLYMA05G14455 Glycine max GLYMA05G14455 I
GLYMA10G30160 Glycine max GLYMA10G30160 I
GLYMA19G43180 Glycine max GLYMA19G43180 I
GLYMA20G37240 Glycine max GLYMA20G37240 I
Cucsa.288940 Cucumis sativus Cucsa.288940 I
PGSC0003DMG400022471 Solanum tuberosum PGSC0003DMG400022471 I
POPTR_0001s26910 Populus trichocarpa POPTR_0001s26910 I
POPTR_0009s06130 Populus trichocarpa POPTR_0009s06130 I
POPTR_1258s00200 Populus trichocarpa POPTR_1258s00200 I
PRUPE_ppa006905mg Prunus persica PRUPE_ppa006905mg I
Solyc01g097890.2 Solanum lycopersicum Solyc01g097890.2 I
Solyc02g083750.1 Solanum lycopersicum Solyc02g083750.1 I
TCM_026408 Theobroma cacao TCM_026408 I
Ca_01216 Cicer arietinum Ca_01216 I
Ca_03737 Cicer arietinum Ca_03737 I
Cla011457 Citrullus lanatus Cla011457 I
30128.m008635 Ricinus communis 30128.m008635 I
cassava22731.valid.m1 Manihot esculenta cassava22731.valid.m1 I