GA20515 (Drosophila pseudoobscura)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 FBgn0080509 T114755_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gl
M03671_2.00 		Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY		 SELEX
Nitta et al.(2015)
gl_1 		0.827 1.000
gl
M06078_2.00 		Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH		 B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618 		0.827 1.000
gl
M06079_2.00 		Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA		 B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618 		0.827 1.000
gl
M06080_2.00 		Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN		 B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0283805 C2H2 ZF 436 457
FBpp0283805 C2H2 ZF 463 485
FBpp0283805 C2H2 ZF 491 513
FBpp0283805 C2H2 ZF 519 541
FBpp0283805 C2H2 ZF 547 569
FBpp0297830 C2H2 ZF 436 457
FBpp0297830 C2H2 ZF 463 485
FBpp0297830 C2H2 ZF 491 513
FBpp0297830 C2H2 ZF 519 541

Links

Other C2H2 ZF family TFs
Other Drosophila pseudoobscura TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G22990 Arabidopsis thaliana AT5G22990 D
AT2G15740 Arabidopsis thaliana AT2G15740 D
Bostr.18351s0050 Boechera stricta Bostr.18351s0050 I
Thhalv10023174m.g Eutrema salsugineum Thhalv10023174m.g I
Thhalv10015522m.g Eutrema salsugineum Thhalv10015522m.g I
Carubv10027554m.g Capsella rubella Carubv10027554m.g I
Carubv10025077m.g Capsella rubella Carubv10025077m.g I
Carubv10016477m.g Capsella rubella Carubv10016477m.g I
Carubv10015875m.g Capsella rubella Carubv10015875m.g I
Carubv10002800m.g Capsella rubella Carubv10002800m.g I
Cagra.6034s0007 Capsella grandiflora Cagra.6034s0007 I
Cagra.3954s0034 Capsella grandiflora Cagra.3954s0034 I
Cagra.0604s0001 Capsella grandiflora Cagra.0604s0001 I
Bostr.10199s0147 Boechera stricta Bostr.10199s0147 I
scaffold_602360.1 Arabidopsis lyrata scaffold_602360.1 I
scaffold_303767.1 Arabidopsis lyrata scaffold_303767.1 I
Bra039606 Brassica rapa Bra039606 I
Bo9g147060 Brassica oleracea Bo9g147060 I
Bo7g010020 Brassica oleracea Bo7g010020 I
AT5G42640 Arabidopsis thaliana AT5G42640 I
AT2G18490 Arabidopsis thaliana AT2G18490 I