CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GLYMA18G52410 *(Glycine max)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	GLYMA18G52410	T118435_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT5G03510 M00860_2.00	Arabidopsis thaliana	NNHRSWN	NWSYDNN	PBM Franco-Zorrilla et al.(2014) ZAT14	0.800	0.783
AT5G04390 M01857_2.00	Arabidopsis thaliana	NNHRSWN	NWSYDNN	PBM Weirauch et al.(2014) pTH7158	0.795	0.826
AT5G04390 M06819_2.00	Arabidopsis thaliana	HHHHWHCACTN	NAGTGDWDDDD	Dap-seq OMalley et al.(2016) At5g04390_col200_a	0.795	0.826
AT3G53600 M01856_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7188	0.786	0.783
AT3G53600 M00858_2.00	Arabidopsis thaliana	NNNNRSWN	NWSYNNNN	PBM Franco-Zorrilla et al.(2014) ZAT18	0.786	0.783
ZAT1 M01167_2.00	Arabidopsis thaliana	NHRCTNN	NNAGYDN	PBM Lambert et al.(2019) pTH10246	0.774	0.696
ZAT7 M01855_2.00	Arabidopsis thaliana	NVDBRCACTNNNN	NNNNAGTGYVHBN	PBM Weirauch et al.(2014) pTH7540	0.771	0.761
AT3G46070 M06813_2.00	Arabidopsis thaliana	HYHHYHTCACTYHHH	DDDRAGTGADRDDRD	Dap-seq OMalley et al.(2016) AT3G46070_col_a	0.763	0.804
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

Links
Other C2H2 ZF family TFs
Other *Glycine max* TFs

391 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CapteG88086	Capitella teleta	CapteG88086	I
klf2b	Tetraodon nigroviridis	ENSTNIG00000014898	I
klf2b	Takifugu rubripes	ENSTRUG00000010065	I
SPU_020311	Strongylocentrotus purpuratus	SPU_020311	I
Ocbimv22019777m.g	Octopus bimaculoides	Ocbimv22019777m.g	I
Sakowv30017457m.g	Saccoglossus kowalevskii	Sakowv30017457m.g	I
BGLB007176	Biomphalaria glabrata	BGLB007176	I