PGSC0003DMG400023547 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400023547 T125834_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.786 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.786 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400060523 C2H2 ZF 27 49
PGSC0003DMT400060523 C2H2 ZF 72 94

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

391 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
UCRNP2_4782 Neofusicoccum parvum UCRNP2_4782 N
PFICI_13726 Pestalotiopsis fici PFICI_13726 N
PODANS_5_4070 Podospora anserina PODANS_5_4070 N
PTRG_10286 Pyrenophora triticirepentis PTRG_10286 N
PTT_13765 Pyrenophora teres PTT_13765 N
PV09_00164 Verruconis gallopava PV09_00164 N
SETTUDRAFT_87447 Setosphaeria turcica SETTUDRAFT_87447 N
SMAC_07447 Sordaria macrospora SMAC_07447 N
SPBR_06366 Sporothrix brasiliensis SPBR_06366 N
THITE_9135 Thielavia terrestris THITE_9135 N
OIDMADRAFT_74239 Oidiodendron maius OIDMADRAFT_74239 N
V499_01836 Pseudogymnoascus pannorum V499_01836 N
VDAG_01189 Verticillium dahliae VDAG_01189 N
VDBG_03963 Verticillium alfalfae VDBG_03963 N
estExt_Genewise1Plus.C_chr_31365 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_31365 N
fgenesh1_pg.sca_8_chr1_1_0000412 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000412 N
gw1.2.32.1 Cochliobolus heterostrophus C5 gw1.2.32.1 N
col-25 Neurospora crassa NCU06068 N
AB00088.1 Alternaria brassicicola AB00088.1 N
DOTSEDRAFT_176530 Dothistroma septosporum DOTSEDRAFT_176530 N
VDBG_03963 Verticillium albo atrum VDBG_03963 N
ACRE_028580 Acremonium chrysogenum ACRE_028580 N
CH063_03657 Colletotrichum higginsianum CH063_03657 N
CHGG_09798 Chaetomium globosum CHGG_09798 N
COCC4DRAFT_87358 Bipolaris maydis COCC4DRAFT_87358 N
COCCADRAFT_90976 Bipolaris zeicola COCCADRAFT_90976 N
COCMIDRAFT_81530 Bipolaris oryzae COCMIDRAFT_81530 N
COCSADRAFT_105936 Bipolaris sorokiniana COCSADRAFT_105936 N
CTHT_0017920 Chaetomium thermophilum CTHT_0017920 N
SNOG_09876 Stagonospora nodorum SNOG_09876 N
F503_03119 Ophiostoma piceae uamh F503_03119 N
FFUJ_01581 Fusarium fujikuroi FFUJ_01581 N
FGRRES_01378 Fusarium graminearum FGRRES_01378 N
FPSE_11552 Fusarium pseudograminearum FPSE_11552 N
HMPREF1624_07083 Sporothrix schenckii HMPREF1624_07083 N
MYCFIDRAFT_158158 Pseudocercospora fijiensis MYCFIDRAFT_158158 N
Mycgr3G70082 Zymoseptoria tritici Mycgr3G70082 N
NechaG74381 Fusarium solani NechaG74381 N