POPTR_0002s12010 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_0002s12010 T126791_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.821 0.891
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.802 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.800 0.739
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.800 0.717
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.795 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.795 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.795 0.804
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.786 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.786 0.761
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s12010.1 C2H2 ZF 93 115
POPTR_0002s12010.1 C2H2 ZF 147 169

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ada-1 Neurospora crassa NCU00499 D
ANIA_01536 Aspergillus nidulans CADANIAG00008163 D
NechaG90126 Fusarium solani NechaG90126 I
S40288_07855 Stachybotrys chartarum S40288_07855 I
S40285_00620 Stachybotrys chlorohalonata S40285_00620 I
PVAR5_2855 Byssochlamys spectabilis PVAR5_2855 I
PMAA_009160 Talaromyces marneffei PMAA_009160 I
PFICI_01318 Pestalotiopsis fici PFICI_01318 I
PDE_06458 Penicillium oxalicum PDE_06458 I
OCS_03094 Ophiocordyceps sinensis OCS_03094 I
NEUTE1DRAFT_119203 Neurospora tetrasperma NEUTE1DRAFT_119203 I
TRIATDRAFT_182347 Trichoderma atroviride TRIATDRAFT_182347 I
MYCTH_2297012 Myceliophthora thermophila MYCTH_2297012 I
MPH_00439 Macrophomina phaseolina MPH_00439 I
MGU_02844 Metarhizium guizhouense MGU_02844 I
VDBG_04532 Verticillium albo atrum VDBG_04532 I
MBR_03350 Metarhizium brunneum MBR_03350 I
THITE_2112457 Thielavia terrestris THITE_2112457 I
MGG_04758 Magnaporthe oryzae MGG_04758 I
TRIREDRAFT_73654 Trichoderma reesei TRIREDRAFT_73654 I
TRIVIDRAFT_212339 Trichoderma virens TRIVIDRAFT_212339 I
TSTA_058790 Talaromyces stipitatus TSTA_058790 I
UCRNP2_4189 Neofusicoccum parvum UCRNP2_4189 I
UCRPA7_6727 Togninia minima UCRPA7_6727 I
UV8b_4299 Ustilaginoidea virens UV8b_4299 I
VDBG_04532 Verticillium alfalfae VDBG_04532 I
W97_01077 Coniosporium apollinis W97_01077 I
X797_004019 Metarhizium robertsii X797_004019 I
estExt_fgenesh3_kg.C_40162 Neurospora discreta estExt_fgenesh3_kg.C_40162 I
fgenesh1_pg.C_scaffold_5000767 Cryphonectria parasitica fgenesh1_pg.C_scaffold_5000767 I
PMAA_009160 Penicillium marneffei PMAA_009160 I
MAPG_06371 Magnaporthe poae MAPG_06371 I
ACRE_062880 Acremonium chrysogenum ACRE_062880 I
BGHDH14_bgh02127 Blumeria graminis BGHDH14_bgh02127 I
CADANGAG00013191 Aspergillus niger CADANGAG00013191 I
ATEG_04779 Aspergillus terreus CADATEAG00007874 I
CFIO01_10230 Colletotrichum fioriniae CFIO01_10230 I
CGGC5_7534 Colletotrichum gloeosporioides CGGC5_7534 I
CH063_11966 Colletotrichum higginsianum CH063_11966 I
CHGG_05948 Chaetomium globosum CHGG_05948 I
CMQ_48 Grosmannia clavigera CMQ_48 I
Cob_12403 Colletotrichum orbiculare Cob_12403 I
CSUB01_03595 Colletotrichum sublineola CSUB01_03595 I
CTHT_0003390 Chaetomium thermophilum CTHT_0003390 I
F503_03145 Ophiostoma piceae uamh F503_03145 I
FFUJ_01033 Fusarium fujikuroi FFUJ_01033 I
MBM_02315 Marssonina brunnea MBM_02315 I
FGRRES_00515 Fusarium graminearum FGRRES_00515 I
FOXG_00543 Fusarium oxysporum FOXG_00543 I
FPSE_04421 Fusarium pseudograminearum FPSE_04421 I
FVEG_00971 Fusarium verticillioides FVEG_00971 I
GGTG_01969 Gaeumannomyces graminis GGTG_01969 I
GLRG_01353 Colletotrichum graminicola GLRG_01353 I
MANI_001414 Metarhizium anisopliae MANI_001414 I
MAM_01947 Metarhizium album MAM_01947 I
M7I_4877 Glarea lozoyensis M7I_4877 I
MAC_02987 Metarhizium acridum MAC_02987 I
MAJ_00756 Metarhizium majus MAJ_00756 I
GMDG_05105 Pseudogymnoascus destructans GMDG_05105 N
Bcin02g04140 Botrytis cinerea Bcin02g04140 N
V499_03811 Pseudogymnoascus pannorum V499_03811 N
SBOR_6525 Sclerotinia borealis SBOR_6525 N
OIDMADRAFT_129628 Oidiodendron maius OIDMADRAFT_129628 N
SS1G_01411 Sclerotinia sclerotiorum SS1G_01411 N