POPTR_1833s00200 (Populus trichocarpa)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 POPTR_1833s00200 T126854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.777 0.783
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.804
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.783
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.762 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_1833s00200.1 C2H2 ZF 3 25
POPTR_1833s00200.1 C2H2 ZF 50 72

Links

Other C2H2 ZF family TFs
Other Populus trichocarpa TFs

358 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NBR_0000629001 Nippostrongylus brasiliensis NBR_0000629001 N
EEL_0000830101 Elaeophora elaphi EEL_0000830101 N
EVEC_0000194801 Enterobius vermicularis EVEC_0000194801 N
HCOI00330900 Haemonchus contortus HCOI00330900 N
HCOI01806100 Haemonchus contortus HCOI01806100 N
HPBE_0000440101 Heligmosomoides bakeri HPBE_0000440101 N
HPBE_0001513201 Heligmosomoides bakeri HPBE_0001513201 N
HPLM_0002087001 Haemonchus placei HPLM_0002087001 N
L596_g11850 Steinernema carpocapsae L596_g11850 N
L889_g22661 Steinernema feltiae L889_g22661 N
L892_g11119 Steinernema scapterisci L892_g11119 N
L898_g21717 Steinernema monticolum L898_g21717 N
NBR_0000040001 Nippostrongylus brasiliensis NBR_0000040001 N
DME_0000059301 Dracunculus medinensis DME_0000059301 N
NECAME_08826 Necator americanus NECAME_08826 N
NECAME_13951 Necator americanus NECAME_13951 N
nLs.2.1.2.g07235 Litomosoides sigmodontis nLs.2.1.2.g07235 N
OESDEN_11949 Oesophagostomum dentatum OESDEN_11949 N
OESDEN_12713 Oesophagostomum dentatum OESDEN_12713 N
SMUV_0000052701 Syphacia muris SMUV_0000052701 N
TCLT_0000096701 Thelazia callipaeda TCLT_0000096701 N
TCNE_0000182901 Toxocara canis TCNE_0000182901 N
TELCIR_06949 Teladorsagia circumcincta TELCIR_06949 N
TELCIR_17174 Teladorsagia circumcincta TELCIR_17174 N
TELCIR_18013 Teladorsagia circumcincta TELCIR_18013 N
ANCCAN_02247 Ancylostoma caninum ANCCAN_02247 N
Bm11274 Brugia malayi Bm11274 N
Bm2582 Brugia malayi Bm2582 N
CBG21175 Caenorhabditis briggsae CBG21175 N
CBN05278 Caenorhabditis brenneri CBN05278 N
CJA09215 Caenorhabditis japonica CJA09215 N
CRE29369 Caenorhabditis remanei CRE29369 N
cnd-1 Caenorhabditis elegans WBGene00000561 N
WBGene00244893 Onchocerca volvulus WBGene00244893 N
ACAC_0001283001 Angiostrongylus cantonensis ACAC_0001283001 N
ACAC_0001410501 Angiostrongylus cantonensis ACAC_0001410501 N
ACOC_0000469401 Angiostrongylus costaricensis ACOC_0000469401 N
ACOC_0000510301 Angiostrongylus costaricensis ACOC_0000510301 N
WUBG_13863 Wuchereria bancrofti WUBG_13863 N
ANCCAN_23216 Ancylostoma caninum ANCCAN_23216 N
ANCCAN_24109 Ancylostoma caninum ANCCAN_24109 N
ANCCEY_03736 Ancylostoma ceylanicum ANCCEY_03736 N
ANCDUO_15875 Ancylostoma duodenale ANCDUO_15875 N
ANCDUO_17699 Ancylostoma duodenale ANCDUO_17699 N
ASIM_0001057401 Anisakis simplex ASIM_0001057401 N
ASU_11875 Ascaris suum ASU_11875 N
BTMF_0001630801 Brugia timori BTMF_0001630801 N
CGOC_0001421301 Cylicostephanus goldi CGOC_0001421301 N
DICVIV_00659 Dictyocaulus viviparus DICVIV_00659 N
DICVIV_09133 Dictyocaulus viviparus DICVIV_09133 N