Sb09g022660 (Sorghum bicolor)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Sb09g022660 T128258_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.784 0.750
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.784 0.750
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.774 0.773
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.770 0.795
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.770 0.795
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.769 0.727
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.766 0.818
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb09g022660.1 C2H2 ZF 52 74
Sb09g022660.1 C2H2 ZF 113 133

Links

Other C2H2 ZF family TFs
Other Sorghum bicolor TFs

357 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TGA10 Arabidopsis thaliana AT5G06839 D 0.000
OS05G0443900 Oryza sativa OS05G0443900 I 0.000
PDK_20s1736691g001 Phoenix dactylifera PDK_20s1736691g001 I 0.000
PDK_20s1405291g002 Phoenix dactylifera PDK_20s1405291g002 I 0.000
Thhalv10014032m.g Eutrema salsugineum Thhalv10014032m.g I 0.000
Eucgr.K01822 Eucalyptus grandis Eucgr.K01822 I 0.000
Eucgr.G02341 Eucalyptus grandis Eucgr.G02341 I 0.000
Carubv10003744m.g Capsella rubella Carubv10003744m.g I 0.000
Cagra.8005s0020 Capsella grandiflora Cagra.8005s0020 I 0.000
Bostr.26959s0025 Boechera stricta Bostr.26959s0025 I 0.000
Bostr.13129s0288 Boechera stricta Bostr.13129s0288 I 0.000
Solyc11g068370.1 Solanum lycopersicum Solyc11g068370.1 I 0.000
Solyc10g080410.1 Solanum lycopersicum Solyc10g080410.1 I 0.000
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.000
PGSC0003DMG400023678 Solanum tuberosum PGSC0003DMG400023678 I 0.000
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.000
ORGLA05G0158500 Oryza glaberrima ORGLA05G0158500 I 0.000
BGIOSGA019942 Oryza indica BGIOSGA019942 I 0.000
Bo3g004060 Brassica oleracea Bo3g004060 I 0.000
Bo9g175780 Brassica oleracea Bo9g175780 I 0.000
TGA10 Arabidopsis lyrata fgenesh2_kg.6__632__AT5G06839.2 I 0.000
GLYMA03G29825 Glycine max GLYMA03G29825 I 0.000
GLYMA19G32715 Glycine max GLYMA19G32715 I 0.000
GSMUA_Achr11G14570_001 Musa acuminata GSMUA_Achr11G14570_001 I 0.000
LPERR05G14450 Leersia perrieri LPERR05G14450 I 0.000
OB05G26080 Oryza brachyantha OB05G26080 I 0.000
OBART05G18270 Oryza barthii OBART05G18270 I 0.000
OGLUM05G19350 Oryza glumaepatula OGLUM05G19350 I 0.000
OLONG_005656 Oryza longistaminata OLONG_005656 I 0.000
OMERI05G15750 Oryza meridionalis OMERI05G15750 I 0.000
ONIVA05G19180 Oryza nivara ONIVA05G19180 I 0.000
ORUFI05G19430 Oryza rufipogon ORUFI05G19430 I 0.000
Cagra.3364s0020 Capsella grandiflora Cagra.3364s0020 N 0.000
Carubv10021345m.g Capsella rubella Carubv10021345m.g N 0.000